ZNF676.H13INVITRO.0.PSG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF676.H13INVITRO.0.PSG.A
Gene (human)	ZNF676 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	21
Consensus	hvGCGASRSYhSYhhvSvMnh
GC content	62.09%
Information content (bits; total / per base)	13.565 / 0.646
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	9217
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	1 (1)	0.744	0.744	0.6	0.6	0.524	0.524	1.854	1.854

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 1 experiments	median	0.997	0.995	0.96	0.956	0.81	0.825
GFPIVT, 1 experiments	best	0.997	0.995	0.96	0.956	0.81	0.825

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 1 experiments	median	323.161	0.862	0.889	0.869
GFPIVT, 1 experiments	best	402.155	0.891	0.912	0.874

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.183
HGNC	HGNC:20429
MGI
EntrezGene (human)	GeneID:163223 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN676_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q8N7Q3 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF676.H13INVITRO.0.PSG.A.pcm
PWM	ZNF676.H13INVITRO.0.PSG.A.pwm
PFM	ZNF676.H13INVITRO.0.PSG.A.pfm
Threshold to P-value map	ZNF676.H13INVITRO.0.PSG.A.thr
Motif in other formats
JASPAR format	ZNF676.H13INVITRO.0.PSG.A_jaspar_format.txt
MEME format	ZNF676.H13INVITRO.0.PSG.A_meme_format.meme
Transfac format	ZNF676.H13INVITRO.0.PSG.A_transfac_format.txt
Homer format	ZNF676.H13INVITRO.0.PSG.A_homer_format_0.001.txt ZNF676.H13INVITRO.0.PSG.A_homer_format_0.0005.txt ZNF676.H13INVITRO.0.PSG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	1637.0	3883.0	1440.0	2257.0
02	3469.5	997.5	3830.5	919.5
03	560.0	415.0	7934.0	308.0
04	55.0	8975.0	41.0	146.0
05	108.0	286.0	8365.0	458.0
06	9092.0	63.0	16.0	46.0
07	107.0	4946.0	2949.0	1215.0
08	4718.0	91.0	3651.0	757.0
09	169.0	4322.0	4677.0	49.0
10	229.0	4445.0	87.0	4456.0
11	4939.0	1927.0	692.0	1659.0
12	1337.0	6252.0	1380.0	248.0
13	320.0	4020.0	256.0	4621.0
14	2084.0	4378.0	688.0	2067.0
15	2892.0	3599.0	775.0	1951.0
16	1151.0	2132.0	5108.0	826.0
17	839.0	5583.0	1949.0	846.0
18	4956.0	2385.0	1128.0	748.0
19	1173.0	6400.0	613.0	1031.0
20	2726.75	2675.75	1470.75	2343.75
21	1586.0	4344.0	1010.0	2277.0

PFM

	A	C	G	T
01	0.178	0.421	0.156	0.245
02	0.376	0.108	0.416	0.1
03	0.061	0.045	0.861	0.033
04	0.006	0.974	0.004	0.016
05	0.012	0.031	0.908	0.05
06	0.986	0.007	0.002	0.005
07	0.012	0.537	0.32	0.132
08	0.512	0.01	0.396	0.082
09	0.018	0.469	0.507	0.005
10	0.025	0.482	0.009	0.483
11	0.536	0.209	0.075	0.18
12	0.145	0.678	0.15	0.027
13	0.035	0.436	0.028	0.501
14	0.226	0.475	0.075	0.224
15	0.314	0.39	0.084	0.212
16	0.125	0.231	0.554	0.09
17	0.091	0.606	0.211	0.092
18	0.538	0.259	0.122	0.081
19	0.127	0.694	0.067	0.112
20	0.296	0.29	0.16	0.254
21	0.172	0.471	0.11	0.247

PWM

	A	C	G	T
01	-0.341	0.521	-0.47	-0.021
02	0.409	-0.836	0.508	-0.917
03	-1.411	-1.71	1.236	-2.006
04	-3.696	1.359	-3.976	-2.744
05	-3.04	-2.08	1.289	-1.612
06	1.372	-3.565	-4.838	-3.866
07	-3.05	0.763	0.246	-0.639
08	0.716	-3.208	0.46	-1.111
09	-2.6	0.629	0.707	-3.806
10	-2.3	0.657	-3.252	0.659
11	0.762	-0.179	-1.201	-0.328
12	-0.544	0.998	-0.512	-2.221
13	-1.968	0.556	-2.189	0.695
14	-0.1	0.641	-1.206	-0.109
15	0.227	0.446	-1.088	-0.166
16	-0.693	-0.078	0.796	-1.024
17	-1.009	0.884	-0.167	-1.0
18	0.765	0.034	-0.713	-1.123
19	-0.674	1.021	-1.321	-0.803
20	0.168	0.149	-0.448	0.017
21	-0.373	0.634	-0.824	-0.012

Standard thresholds

P-value	Threshold
0.001	3.59786
0.0005	4.67541
0.0001	6.89656