ZNF676.H13INVIVO.0.PSG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF676.H13INVIVO.0.PSG.A
Gene (human)	ZNF676 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	12
Consensus	RRGKGCWGSSRG
GC content	70.15%
Information content (bits; total / per base)	10.577 / 0.881
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	500
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	1 (1)	0.699	0.699	0.554	0.554	0.59	0.59	2.959	2.959

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 1 experiments	median	0.627	0.627	0.543	0.56	0.506	0.529
GFPIVT, 1 experiments	best	0.627	0.627	0.543	0.56	0.506	0.529

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 1 experiments	median	277.699	0.831	0.855	0.855
GFPIVT, 1 experiments	best	345.721	0.866	0.875	0.876

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.183
HGNC	HGNC:20429
MGI
EntrezGene (human)	GeneID:163223 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN676_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q8N7Q3 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF676.H13INVIVO.0.PSG.A.pcm
PWM	ZNF676.H13INVIVO.0.PSG.A.pwm
PFM	ZNF676.H13INVIVO.0.PSG.A.pfm
Threshold to P-value map	ZNF676.H13INVIVO.0.PSG.A.thr
Motif in other formats
JASPAR format	ZNF676.H13INVIVO.0.PSG.A_jaspar_format.txt
MEME format	ZNF676.H13INVIVO.0.PSG.A_meme_format.meme
Transfac format	ZNF676.H13INVIVO.0.PSG.A_transfac_format.txt
Homer format	ZNF676.H13INVIVO.0.PSG.A_homer_format_0.001.txt ZNF676.H13INVIVO.0.PSG.A_homer_format_0.0005.txt ZNF676.H13INVIVO.0.PSG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	93.0	80.0	303.0	24.0
02	320.0	9.0	150.0	21.0
03	81.0	16.0	394.0	9.0
04	61.0	29.0	316.0	94.0
05	4.0	48.0	434.0	14.0
06	31.0	459.0	4.0	6.0
07	89.0	22.0	74.0	315.0
08	2.0	11.0	469.0	18.0
09	52.0	299.0	107.0	42.0
10	61.0	159.0	262.0	18.0
11	343.0	12.0	138.0	7.0
12	65.0	10.0	404.0	21.0

PFM

	A	C	G	T
01	0.186	0.16	0.606	0.048
02	0.64	0.018	0.3	0.042
03	0.162	0.032	0.788	0.018
04	0.122	0.058	0.632	0.188
05	0.008	0.096	0.868	0.028
06	0.062	0.918	0.008	0.012
07	0.178	0.044	0.148	0.63
08	0.004	0.022	0.938	0.036
09	0.104	0.598	0.214	0.084
10	0.122	0.318	0.524	0.036
11	0.686	0.024	0.276	0.014
12	0.13	0.02	0.808	0.042

PWM

	A	C	G	T
01	-0.291	-0.439	0.878	-1.6
02	0.932	-2.484	0.18	-1.725
03	-0.427	-1.975	1.14	-2.484
04	-0.705	-1.421	0.92	-0.281
05	-3.126	-0.938	1.236	-2.096
06	-1.358	1.292	-3.126	-2.819
07	-0.335	-1.681	-0.516	0.917
08	-3.573	-2.311	1.313	-1.868
09	-0.86	0.865	-0.153	-1.067
10	-0.705	0.238	0.734	-1.868
11	1.002	-2.234	0.098	-2.694
12	-0.643	-2.394	1.165	-1.725

Standard thresholds

P-value	Threshold
0.001	4.620665
0.0005	5.46452
0.0001	7.21302