ZNF678.H13INVIVO.0.PSG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF678.H13INVIVO.0.PSG.A
Gene (human)	ZNF678 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	21
Consensus	GRddGMARhGGGYAGvhnRSM
GC content	60.01%
Information content (bits; total / per base)	18.411 / 0.877
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	168
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	1 (1)	0.926	0.926	0.916	0.916	0.934	0.934	109.284	109.284

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 1 experiments	median	0.671	0.643	0.6	0.589	0.554	0.555
GFPIVT, 1 experiments	best	0.671	0.643	0.6	0.589	0.554	0.555

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 1 experiments	median	268.796	0.813	0.806	0.763
GFPIVT, 1 experiments	best	397.215	0.834	0.831	0.785

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.185
HGNC	HGNC:28652
MGI
EntrezGene (human)
EntrezGene (mouse)
UniProt ID (human)	ZN678_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q5SXM1 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF678.H13INVIVO.0.PSG.A.pcm
PWM	ZNF678.H13INVIVO.0.PSG.A.pwm
PFM	ZNF678.H13INVIVO.0.PSG.A.pfm
Threshold to P-value map	ZNF678.H13INVIVO.0.PSG.A.thr
Motif in other formats
JASPAR format	ZNF678.H13INVIVO.0.PSG.A_jaspar_format.txt
MEME format	ZNF678.H13INVIVO.0.PSG.A_meme_format.meme
Transfac format	ZNF678.H13INVIVO.0.PSG.A_transfac_format.txt
Homer format	ZNF678.H13INVIVO.0.PSG.A_homer_format_0.001.txt ZNF678.H13INVIVO.0.PSG.A_homer_format_0.0005.txt ZNF678.H13INVIVO.0.PSG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	15.0	5.0	147.0	1.0
02	95.0	6.0	60.0	7.0
03	50.0	9.0	78.0	31.0
04	52.0	7.0	31.0	78.0
05	11.0	3.0	133.0	21.0
06	18.0	131.0	9.0	10.0
07	155.0	2.0	10.0	1.0
08	113.0	12.0	36.0	7.0
09	19.0	46.0	18.0	85.0
10	25.0	0.0	142.0	1.0
11	0.0	0.0	167.0	1.0
12	7.0	5.0	156.0	0.0
13	5.0	122.0	5.0	36.0
14	145.0	3.0	6.0	14.0
15	17.0	5.0	143.0	3.0
16	39.0	46.0	72.0	11.0
17	72.0	41.0	17.0	38.0
18	33.0	99.0	18.0	18.0
19	119.0	10.0	28.0	11.0
20	10.0	16.0	133.0	9.0
21	25.0	122.0	18.0	3.0

PFM

	A	C	G	T
01	0.089	0.03	0.875	0.006
02	0.565	0.036	0.357	0.042
03	0.298	0.054	0.464	0.185
04	0.31	0.042	0.185	0.464
05	0.065	0.018	0.792	0.125
06	0.107	0.78	0.054	0.06
07	0.923	0.012	0.06	0.006
08	0.673	0.071	0.214	0.042
09	0.113	0.274	0.107	0.506
10	0.149	0.0	0.845	0.006
11	0.0	0.0	0.994	0.006
12	0.042	0.03	0.929	0.0
13	0.03	0.726	0.03	0.214
14	0.863	0.018	0.036	0.083
15	0.101	0.03	0.851	0.018
16	0.232	0.274	0.429	0.065
17	0.429	0.244	0.101	0.226
18	0.196	0.589	0.107	0.107
19	0.708	0.06	0.167	0.065
20	0.06	0.095	0.792	0.054
21	0.149	0.726	0.107	0.018

PWM

	A	C	G	T
01	-0.978	-1.93	1.231	-2.943
02	0.8	-1.782	0.348	-1.654
03	0.17	-1.437	0.605	-0.293
04	0.208	-1.654	-0.293	0.605
05	-1.26	-2.314	1.132	-0.664
06	-0.809	1.117	-1.437	-1.345
07	1.284	-2.58	-1.345	-2.943
08	0.971	-1.181	-0.149	-1.654
09	-0.758	0.088	-0.809	0.69
10	-0.499	-3.52	1.197	-2.943
11	-3.52	-3.52	1.358	-2.943
12	-1.654	-1.93	1.29	-3.52
13	-1.93	1.047	-1.93	-0.149
14	1.218	-2.314	-1.782	-1.041
15	-0.862	-1.93	1.204	-2.314
16	-0.072	0.088	0.527	-1.26
17	0.527	-0.023	-0.862	-0.097
18	-0.233	0.84	-0.809	-0.809
19	1.022	-1.345	-0.391	-1.26
20	-1.345	-0.918	1.132	-1.437
21	-0.499	1.047	-0.809	-2.314

Standard thresholds

P-value	Threshold
0.001	2.44851
0.0005	3.59901
0.0001	6.04016