ZNF678.H13RSNP.0.PSG.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF678.H13RSNP.0.PSG.D
Gene (human)	ZNF678 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	21
Consensus	dddKvRndGGGYAGGMhRKSM
GC content	56.07%
Information content (bits; total / per base)	15.142 / 0.721
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	500
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	1 (1)	0.925	0.925	0.911	0.911	0.929	0.929	105.398	105.398

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 1 experiments	median	0.723	0.691	0.644	0.623	0.588	0.581
GFPIVT, 1 experiments	best	0.723	0.691	0.644	0.623	0.588	0.581

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 1 experiments	median	336.357	0.869	0.867	0.85
GFPIVT, 1 experiments	best	469.444	0.894	0.891	0.869

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.185
HGNC	HGNC:28652
MGI
EntrezGene (human)
EntrezGene (mouse)
UniProt ID (human)	ZN678_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q5SXM1 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF678.H13RSNP.0.PSG.D.pcm
PWM	ZNF678.H13RSNP.0.PSG.D.pwm
PFM	ZNF678.H13RSNP.0.PSG.D.pfm
Threshold to P-value map	ZNF678.H13RSNP.0.PSG.D.thr
Motif in other formats
JASPAR format	ZNF678.H13RSNP.0.PSG.D_jaspar_format.txt
MEME format	ZNF678.H13RSNP.0.PSG.D_meme_format.meme
Transfac format	ZNF678.H13RSNP.0.PSG.D_transfac_format.txt
Homer format	ZNF678.H13RSNP.0.PSG.D_homer_format_0.001.txt ZNF678.H13RSNP.0.PSG.D_homer_format_0.0005.txt ZNF678.H13RSNP.0.PSG.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	231.0	42.0	153.0	74.0
02	145.0	59.0	192.0	104.0
03	123.0	32.0	190.0	155.0
04	59.0	55.0	304.0	82.0
05	135.0	256.0	63.0	46.0
06	348.0	31.0	83.0	38.0
07	239.0	67.0	127.0	67.0
08	101.0	59.0	102.0	238.0
09	55.0	3.0	422.0	20.0
10	3.0	2.0	487.0	8.0
11	13.0	8.0	467.0	12.0
12	21.0	186.0	6.0	287.0
13	423.0	0.0	49.0	28.0
14	14.0	1.0	467.0	18.0
15	45.0	44.0	407.0	4.0
16	300.0	97.0	46.0	57.0
17	94.0	255.0	64.0	87.0
18	349.0	20.0	106.0	25.0
19	33.0	32.0	395.0	40.0
20	48.0	338.0	68.0	46.0
21	353.0	53.0	49.0	45.0

PFM

	A	C	G	T
01	0.462	0.084	0.306	0.148
02	0.29	0.118	0.384	0.208
03	0.246	0.064	0.38	0.31
04	0.118	0.11	0.608	0.164
05	0.27	0.512	0.126	0.092
06	0.696	0.062	0.166	0.076
07	0.478	0.134	0.254	0.134
08	0.202	0.118	0.204	0.476
09	0.11	0.006	0.844	0.04
10	0.006	0.004	0.974	0.016
11	0.026	0.016	0.934	0.024
12	0.042	0.372	0.012	0.574
13	0.846	0.0	0.098	0.056
14	0.028	0.002	0.934	0.036
15	0.09	0.088	0.814	0.008
16	0.6	0.194	0.092	0.114
17	0.188	0.51	0.128	0.174
18	0.698	0.04	0.212	0.05
19	0.066	0.064	0.79	0.08
20	0.096	0.676	0.136	0.092
21	0.706	0.106	0.098	0.09

PWM

	A	C	G	T
01	0.608	-1.067	0.2	-0.516
02	0.147	-0.737	0.425	-0.181
03	-0.016	-1.328	0.415	0.213
04	-0.737	-0.805	0.881	-0.415
05	0.076	0.711	-0.673	-0.979
06	1.016	-1.358	-0.403	-1.163
07	0.642	-0.613	0.016	-0.613
08	-0.21	-0.737	-0.201	0.638
09	-0.805	-3.325	1.208	-1.77
10	-3.325	-3.573	1.351	-2.584
11	-2.163	-2.584	1.309	-2.234
12	-1.725	0.393	-2.819	0.824
13	1.21	-4.4	-0.918	-1.454
14	-2.096	-3.903	1.309	-1.868
15	-1.0	-1.022	1.172	-3.126
16	0.868	-0.25	-0.979	-0.771
17	-0.281	0.707	-0.658	-0.357
18	1.019	-1.77	-0.163	-1.561
19	-1.298	-1.328	1.142	-1.114
20	-0.938	0.987	-0.599	-0.979
21	1.03	-0.841	-0.918	-1.0

Standard thresholds

P-value	Threshold
0.001	3.36611
0.0005	4.41546
0.0001	6.62656