ZNF689.H13INVITRO.0.PSG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF689.H13INVITRO.0.PSG.A
Gene (human)	ZNF689 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Znf689
Gene synonyms (mouse)	Zfp689
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	23
Consensus	nbMCYACGCAATAhSvYMnKhhn
GC content	50.87%
Information content (bits; total / per base)	18.871 / 0.82
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	1939
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.893	0.925	0.869	0.907	0.829	0.937	102.709	150.18

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 1 experiments	median	0.999	0.999	0.975	0.973	0.831	0.844
GFPIVT, 1 experiments	best	0.999	0.999	0.975	0.973	0.831	0.844

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 1 experiments	median	555.77	0.843	0.879	0.864
GFPIVT, 1 experiments	best	663.149	0.868	0.905	0.884

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF689-like {2.3.3.66} (TFClass)
TFClass ID	TFClass: 2.3.3.66.1
HGNC	HGNC:25173
MGI	MGI:1918381
EntrezGene (human)	GeneID:115509 (SSTAR profile)
EntrezGene (mouse)	GeneID:71131 (SSTAR profile)
UniProt ID (human)	ZN689_HUMAN
UniProt ID (mouse)	ZN689_MOUSE
UniProt AC (human)	Q96CS4 (TFClass)
UniProt AC (mouse)	Q8BKK5 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF689.H13INVITRO.0.PSG.A.pcm
PWM	ZNF689.H13INVITRO.0.PSG.A.pwm
PFM	ZNF689.H13INVITRO.0.PSG.A.pfm
Threshold to P-value map	ZNF689.H13INVITRO.0.PSG.A.thr
Motif in other formats
JASPAR format	ZNF689.H13INVITRO.0.PSG.A_jaspar_format.txt
MEME format	ZNF689.H13INVITRO.0.PSG.A_meme_format.meme
Transfac format	ZNF689.H13INVITRO.0.PSG.A_transfac_format.txt
Homer format	ZNF689.H13INVITRO.0.PSG.A_homer_format_0.001.txt ZNF689.H13INVITRO.0.PSG.A_homer_format_0.0005.txt ZNF689.H13INVITRO.0.PSG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	482.5	487.5	371.5	597.5
02	222.75	274.75	891.75	549.75
03	831.0	1000.0	86.0	22.0
04	183.0	1602.0	75.0	79.0
05	195.0	915.0	23.0	806.0
06	1828.0	4.0	21.0	86.0
07	77.0	1823.0	4.0	35.0
08	1.0	5.0	1932.0	1.0
09	5.0	1701.0	0.0	233.0
10	1566.0	10.0	355.0	8.0
11	1884.0	45.0	2.0	8.0
12	4.0	17.0	10.0	1908.0
13	1806.0	39.0	15.0	79.0
14	491.0	876.0	122.0	450.0
15	88.0	778.0	877.0	196.0
16	745.0	356.0	619.0	219.0
17	81.0	1161.0	225.0	472.0
18	1354.0	429.0	84.0	72.0
19	473.0	664.0	273.0	529.0
20	146.0	195.0	1400.0	198.0
21	471.0	772.0	189.0	507.0
22	415.25	856.25	186.25	481.25
23	472.5	588.5	324.5	553.5

PFM

	A	C	G	T
01	0.249	0.251	0.192	0.308
02	0.115	0.142	0.46	0.284
03	0.429	0.516	0.044	0.011
04	0.094	0.826	0.039	0.041
05	0.101	0.472	0.012	0.416
06	0.943	0.002	0.011	0.044
07	0.04	0.94	0.002	0.018
08	0.001	0.003	0.996	0.001
09	0.003	0.877	0.0	0.12
10	0.808	0.005	0.183	0.004
11	0.972	0.023	0.001	0.004
12	0.002	0.009	0.005	0.984
13	0.931	0.02	0.008	0.041
14	0.253	0.452	0.063	0.232
15	0.045	0.401	0.452	0.101
16	0.384	0.184	0.319	0.113
17	0.042	0.599	0.116	0.243
18	0.698	0.221	0.043	0.037
19	0.244	0.342	0.141	0.273
20	0.075	0.101	0.722	0.102
21	0.243	0.398	0.097	0.261
22	0.214	0.442	0.096	0.248
23	0.244	0.304	0.167	0.285

PWM

	A	C	G	T
01	-0.005	0.006	-0.265	0.208
02	-0.773	-0.565	0.608	0.125
03	0.537	0.722	-1.711	-3.014
04	-0.968	1.193	-1.845	-1.794
05	-0.905	0.633	-2.973	0.507
06	1.324	-4.414	-3.057	-1.711
07	-1.819	1.322	-4.414	-2.58
08	-5.125	-4.257	1.38	-5.125
09	-4.257	1.253	-5.55	-0.728
10	1.17	-3.712	-0.31	-3.896
11	1.355	-2.34	-4.828	-3.896
12	-4.414	-3.249	-3.712	1.367
13	1.312	-2.477	-3.361	-1.794
14	0.013	0.59	-1.368	-0.074
15	-1.689	0.472	0.591	-0.9
16	0.428	-0.307	0.244	-0.79
17	-1.77	0.871	-0.763	-0.027
18	1.025	-0.122	-1.734	-1.885
19	-0.024	0.314	-0.571	0.087
20	-1.191	-0.905	1.058	-0.89
21	-0.029	0.464	-0.936	0.045
22	-0.154	0.567	-0.95	-0.007
23	-0.025	0.193	-0.399	0.132

Standard thresholds

P-value	Threshold
0.001	0.64501
0.0005	2.08601
0.0001	5.10816