ZNF689.H13INVIVO.0.PSG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF689.H13INVIVO.0.PSG.A
Gene (human)	ZNF689 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Znf689
Gene synonyms (mouse)	Zfp689
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	21
Consensus	WRMMhRhGYRATWhdRYAWGv
GC content	43.55%
Information content (bits; total / per base)	16.929 / 0.806
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	896
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.929	0.963	0.924	0.956	0.882	0.976	128.633	180.796

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 1 experiments	median	0.994	0.992	0.941	0.934	0.789	0.802
GFPIVT, 1 experiments	best	0.994	0.992	0.941	0.934	0.789	0.802

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 1 experiments	median	600.569	0.852	0.866	0.858
GFPIVT, 1 experiments	best	722.125	0.873	0.9	0.875

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF689-like {2.3.3.66} (TFClass)
TFClass ID	TFClass: 2.3.3.66.1
HGNC	HGNC:25173
MGI	MGI:1918381
EntrezGene (human)	GeneID:115509 (SSTAR profile)
EntrezGene (mouse)	GeneID:71131 (SSTAR profile)
UniProt ID (human)	ZN689_HUMAN
UniProt ID (mouse)	ZN689_MOUSE
UniProt AC (human)	Q96CS4 (TFClass)
UniProt AC (mouse)	Q8BKK5 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF689.H13INVIVO.0.PSG.A.pcm
PWM	ZNF689.H13INVIVO.0.PSG.A.pwm
PFM	ZNF689.H13INVIVO.0.PSG.A.pfm
Threshold to P-value map	ZNF689.H13INVIVO.0.PSG.A.thr
Motif in other formats
JASPAR format	ZNF689.H13INVIVO.0.PSG.A_jaspar_format.txt
MEME format	ZNF689.H13INVIVO.0.PSG.A_meme_format.meme
Transfac format	ZNF689.H13INVIVO.0.PSG.A_transfac_format.txt
Homer format	ZNF689.H13INVIVO.0.PSG.A_homer_format_0.001.txt ZNF689.H13INVIVO.0.PSG.A_homer_format_0.0005.txt ZNF689.H13INVIVO.0.PSG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	502.0	48.0	118.0	228.0
02	98.0	26.0	701.0	71.0
03	251.0	614.0	23.0	8.0
04	137.0	638.0	12.0	109.0
05	473.0	187.0	27.0	209.0
06	632.0	45.0	146.0	73.0
07	318.0	173.0	23.0	382.0
08	24.0	17.0	854.0	1.0
09	29.0	617.0	55.0	195.0
10	676.0	13.0	154.0	53.0
11	774.0	74.0	22.0	26.0
12	23.0	47.0	37.0	789.0
13	707.0	64.0	19.0	106.0
14	521.0	107.0	97.0	171.0
15	137.0	124.0	508.0	127.0
16	337.0	61.0	441.0	57.0
17	29.0	627.0	93.0	147.0
18	771.0	93.0	17.0	15.0
19	555.0	42.0	112.0	187.0
20	32.0	9.0	830.0	25.0
21	526.0	184.0	96.0	90.0

PFM

	A	C	G	T
01	0.56	0.054	0.132	0.254
02	0.109	0.029	0.782	0.079
03	0.28	0.685	0.026	0.009
04	0.153	0.712	0.013	0.122
05	0.528	0.209	0.03	0.233
06	0.705	0.05	0.163	0.081
07	0.355	0.193	0.026	0.426
08	0.027	0.019	0.953	0.001
09	0.032	0.689	0.061	0.218
10	0.754	0.015	0.172	0.059
11	0.864	0.083	0.025	0.029
12	0.026	0.052	0.041	0.881
13	0.789	0.071	0.021	0.118
14	0.581	0.119	0.108	0.191
15	0.153	0.138	0.567	0.142
16	0.376	0.068	0.492	0.064
17	0.032	0.7	0.104	0.164
18	0.86	0.104	0.019	0.017
19	0.619	0.047	0.125	0.209
20	0.036	0.01	0.926	0.028
21	0.587	0.205	0.107	0.1

PWM

	A	C	G	T
01	0.803	-1.513	-0.634	0.018
02	-0.817	-2.098	1.136	-1.133
03	0.113	1.004	-2.212	-3.147
04	-0.487	1.042	-2.802	-0.712
05	0.743	-0.179	-2.062	-0.069
06	1.032	-1.575	-0.424	-1.106
07	0.348	-0.256	-2.212	0.531
08	-2.173	-2.491	1.333	-4.426
09	-1.995	1.008	-1.381	-0.138
10	1.099	-2.731	-0.371	-1.417
11	1.235	-1.092	-2.254	-2.098
12	-2.212	-1.534	-1.763	1.254
13	1.144	-1.234	-2.389	-0.74
14	0.84	-0.731	-0.827	-0.268
15	-0.487	-0.585	0.815	-0.562
16	0.406	-1.281	0.674	-1.347
17	-1.995	1.024	-0.868	-0.417
18	1.231	-0.868	-2.491	-2.604
19	0.903	-1.642	-0.686	-0.179
20	-1.902	-3.049	1.304	-2.135
21	0.849	-0.195	-0.837	-0.901

Standard thresholds

P-value	Threshold
0.001	2.69836
0.0005	3.81456
0.0001	6.18381