ZNF696.H13INVIVO.0.PSG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF696.H13INVIVO.0.PSG.A
Gene (human)	ZNF696 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	23
Consensus	ddbGTTAAGAAWGRKbCdGMKKn
GC content	46.85%
Information content (bits; total / per base)	23.914 / 1.04
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	2142
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.855	0.87	0.865	0.874	0.869	0.88	62.931	64.367

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 1 experiments	median	0.997	0.997	0.83	0.844	0.672	0.709
GFPIVT, 1 experiments	best	0.997	0.997	0.83	0.844	0.672	0.709

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 1 experiments	median	189.658	0.918	0.911	0.909
GFPIVT, 1 experiments	best	512.398	0.919	0.917	0.917

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.78
HGNC	HGNC:25872
MGI
EntrezGene (human)	GeneID:79943 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN696_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q9H7X3 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF696.H13INVIVO.0.PSG.A.pcm
PWM	ZNF696.H13INVIVO.0.PSG.A.pwm
PFM	ZNF696.H13INVIVO.0.PSG.A.pfm
Threshold to P-value map	ZNF696.H13INVIVO.0.PSG.A.thr
Motif in other formats
JASPAR format	ZNF696.H13INVIVO.0.PSG.A_jaspar_format.txt
MEME format	ZNF696.H13INVIVO.0.PSG.A_meme_format.meme
Transfac format	ZNF696.H13INVIVO.0.PSG.A_transfac_format.txt
Homer format	ZNF696.H13INVIVO.0.PSG.A_homer_format_0.001.txt ZNF696.H13INVIVO.0.PSG.A_homer_format_0.0005.txt ZNF696.H13INVIVO.0.PSG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	729.0	279.0	680.0	454.0
02	692.0	223.0	899.0	328.0
03	183.0	530.0	574.0	855.0
04	10.0	3.0	2127.0	2.0
05	42.0	4.0	346.0	1750.0
06	1.0	2.0	3.0	2136.0
07	2128.0	11.0	3.0	0.0
08	2117.0	11.0	14.0	0.0
09	1.0	3.0	2138.0	0.0
10	1864.0	220.0	15.0	43.0
11	2063.0	6.0	54.0	19.0
12	1555.0	34.0	228.0	325.0
13	4.0	12.0	2111.0	15.0
14	768.0	181.0	1144.0	49.0
15	142.0	197.0	578.0	1225.0
16	140.0	282.0	620.0	1100.0
17	116.0	1974.0	30.0	22.0
18	634.0	219.0	222.0	1067.0
19	29.0	18.0	2080.0	15.0
20	1265.0	437.0	160.0	280.0
21	157.0	39.0	1682.0	264.0
22	129.75	266.75	1224.75	520.75
23	424.75	400.75	794.75	521.75

PFM

	A	C	G	T
01	0.34	0.13	0.317	0.212
02	0.323	0.104	0.42	0.153
03	0.085	0.247	0.268	0.399
04	0.005	0.001	0.993	0.001
05	0.02	0.002	0.162	0.817
06	0.0	0.001	0.001	0.997
07	0.993	0.005	0.001	0.0
08	0.988	0.005	0.007	0.0
09	0.0	0.001	0.998	0.0
10	0.87	0.103	0.007	0.02
11	0.963	0.003	0.025	0.009
12	0.726	0.016	0.106	0.152
13	0.002	0.006	0.986	0.007
14	0.359	0.085	0.534	0.023
15	0.066	0.092	0.27	0.572
16	0.065	0.132	0.289	0.514
17	0.054	0.922	0.014	0.01
18	0.296	0.102	0.104	0.498
19	0.014	0.008	0.971	0.007
20	0.591	0.204	0.075	0.131
21	0.073	0.018	0.785	0.123
22	0.061	0.125	0.572	0.243
23	0.198	0.187	0.371	0.244

PWM

	A	C	G	T
01	0.308	-0.649	0.238	-0.164
02	0.256	-0.871	0.517	-0.488
03	-1.067	-0.01	0.069	0.467
04	-3.809	-4.694	1.377	-4.921
05	-2.504	-4.509	-0.435	1.182
06	-5.216	-4.921	-4.694	1.381
07	1.377	-3.728	-4.694	-5.636
08	1.372	-3.728	-3.519	-5.636
09	-5.216	-4.694	1.382	-5.636
10	1.245	-0.884	-3.458	-2.482
11	1.346	-4.218	-2.263	-3.246
12	1.064	-2.706	-0.849	-0.497
13	-4.509	-3.654	1.369	-3.458
14	0.36	-1.078	0.757	-2.357
15	-1.318	-0.994	0.076	0.825
16	-1.332	-0.638	0.146	0.718
17	-1.517	1.302	-2.824	-3.112
18	0.168	-0.889	-0.875	0.688
19	-2.855	-3.295	1.354	-3.458
20	0.858	-0.202	-1.2	-0.645
21	-1.218	-2.575	1.142	-0.704
22	-1.406	-0.693	0.825	-0.028
23	-0.231	-0.289	0.394	-0.026

Standard thresholds

P-value	Threshold
0.001	-3.62794
0.0005	-1.84609
0.0001	1.93811