ZNF699.H13CORE.0.PSG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF699.H13CORE.0.PSG.A
Gene (human)	ZNF699 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	18
Consensus	dvvKSYddKSAAGGGTGv
GC content	58.11%
Information content (bits; total / per base)	15.507 / 0.861
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	7757
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.817	0.874	0.754	0.818	0.73	0.85	20.22	26.959

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 1 experiments	median	0.79	0.796	0.635	0.657	0.556	0.587
GFPIVT, 1 experiments	best	0.79	0.796	0.635	0.657	0.556	0.587

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 2 experiments	median	84.087	0.721	0.706	0.674
GFPIVT, 2 experiments	best	292.796	0.878	0.896	0.886

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF763-like {2.3.3.33} (TFClass)
TFClass ID	TFClass: 2.3.3.33.203
HGNC	HGNC:24750
MGI
EntrezGene (human)	GeneID:374879 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN699_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q32M78 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF699.H13CORE.0.PSG.A.pcm
PWM	ZNF699.H13CORE.0.PSG.A.pwm
PFM	ZNF699.H13CORE.0.PSG.A.pfm
Threshold to P-value map	ZNF699.H13CORE.0.PSG.A.thr
Motif in other formats
JASPAR format	ZNF699.H13CORE.0.PSG.A_jaspar_format.txt
MEME format	ZNF699.H13CORE.0.PSG.A_meme_format.meme
Transfac format	ZNF699.H13CORE.0.PSG.A_transfac_format.txt
Homer format	ZNF699.H13CORE.0.PSG.A_homer_format_0.001.txt ZNF699.H13CORE.0.PSG.A_homer_format_0.0005.txt ZNF699.H13CORE.0.PSG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	1852.25	663.25	3983.25	1258.25
02	1391.75	4489.75	974.75	900.75
03	2247.0	1732.0	2961.0	817.0
04	604.0	479.0	5872.0	802.0
05	940.0	1053.0	4948.0	816.0
06	317.0	3429.0	669.0	3342.0
07	2946.0	700.0	3136.0	975.0
08	3471.0	544.0	2665.0	1077.0
09	1177.0	520.0	1470.0	4590.0
10	292.0	1596.0	4700.0	1169.0
11	6706.0	351.0	420.0	280.0
12	7327.0	28.0	241.0	161.0
13	23.0	13.0	7702.0	19.0
14	7.0	6.0	7739.0	5.0
15	81.0	4.0	7611.0	61.0
16	95.0	606.0	152.0	6904.0
17	395.5	279.5	6730.5	351.5
18	4248.0	1621.0	1054.0	834.0

PFM

	A	C	G	T
01	0.239	0.086	0.514	0.162
02	0.179	0.579	0.126	0.116
03	0.29	0.223	0.382	0.105
04	0.078	0.062	0.757	0.103
05	0.121	0.136	0.638	0.105
06	0.041	0.442	0.086	0.431
07	0.38	0.09	0.404	0.126
08	0.447	0.07	0.344	0.139
09	0.152	0.067	0.19	0.592
10	0.038	0.206	0.606	0.151
11	0.865	0.045	0.054	0.036
12	0.945	0.004	0.031	0.021
13	0.003	0.002	0.993	0.002
14	0.001	0.001	0.998	0.001
15	0.01	0.001	0.981	0.008
16	0.012	0.078	0.02	0.89
17	0.051	0.036	0.868	0.045
18	0.548	0.209	0.136	0.108

PWM

	A	C	G	T
01	-0.046	-1.071	0.719	-0.432
02	-0.331	0.839	-0.687	-0.766
03	0.147	-0.113	0.423	-0.863
04	-1.164	-1.395	1.107	-0.881
05	-0.723	-0.61	0.936	-0.864
06	-1.805	0.569	-1.062	0.544
07	0.418	-1.017	0.48	-0.686
08	0.582	-1.268	0.318	-0.587
09	-0.499	-1.313	-0.277	0.861
10	-1.887	-0.195	0.885	-0.505
11	1.24	-1.704	-1.526	-1.928
12	1.328	-4.162	-2.077	-2.476
13	-4.343	-4.847	1.378	-4.515
14	-5.348	-5.462	1.383	-5.592
15	-3.149	-5.74	1.366	-3.424
16	-2.994	-1.161	-2.533	1.269
17	-1.585	-1.93	1.244	-1.703
18	0.784	-0.179	-0.609	-0.842

Standard thresholds

P-value	Threshold
0.001	2.62506
0.0005	3.86876
0.0001	6.42351