ZNF699.H13INVITRO.0.PSG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF699.H13INVITRO.0.PSG.A
Gene (human)	ZNF699 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	20
Consensus	KSYvddSAWGGGTGhvbdbv
GC content	54.2%
Information content (bits; total / per base)	14.348 / 0.717
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	238
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.75	0.805	0.654	0.72	0.734	0.853	12.061	12.854

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 1 experiments	median	0.771	0.762	0.649	0.65	0.584	0.592
GFPIVT, 1 experiments	best	0.771	0.762	0.649	0.65	0.584	0.592

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 2 experiments	median	66.614	0.842	0.859	0.779
GFPIVT, 2 experiments	best	232.523	0.902	0.892	0.83

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF763-like {2.3.3.33} (TFClass)
TFClass ID	TFClass: 2.3.3.33.203
HGNC	HGNC:24750
MGI
EntrezGene (human)	GeneID:374879 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN699_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q32M78 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF699.H13INVITRO.0.PSG.A.pcm
PWM	ZNF699.H13INVITRO.0.PSG.A.pwm
PFM	ZNF699.H13INVITRO.0.PSG.A.pfm
Threshold to P-value map	ZNF699.H13INVITRO.0.PSG.A.thr
Motif in other formats
JASPAR format	ZNF699.H13INVITRO.0.PSG.A_jaspar_format.txt
MEME format	ZNF699.H13INVITRO.0.PSG.A_meme_format.meme
Transfac format	ZNF699.H13INVITRO.0.PSG.A_transfac_format.txt
Homer format	ZNF699.H13INVITRO.0.PSG.A_homer_format_0.001.txt ZNF699.H13INVITRO.0.PSG.A_homer_format_0.0005.txt ZNF699.H13INVITRO.0.PSG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	26.0	2.0	141.0	69.0
02	23.0	26.0	178.0	11.0
03	7.0	102.0	16.0	113.0
04	105.0	19.0	96.0	18.0
05	92.0	26.0	50.0	70.0
06	57.0	6.0	86.0	89.0
07	10.0	118.0	98.0	12.0
08	198.0	21.0	16.0	3.0
09	165.0	6.0	6.0	61.0
10	0.0	0.0	238.0	0.0
11	1.0	0.0	175.0	62.0
12	4.0	4.0	229.0	1.0
13	5.0	6.0	3.0	224.0
14	11.0	3.0	220.0	4.0
15	118.0	71.0	9.0	40.0
16	100.0	43.0	59.0	36.0
17	30.0	46.0	71.0	91.0
18	55.0	31.0	91.0	61.0
19	34.0	48.0	56.0	100.0
20	39.0	42.0	122.0	35.0

PFM

	A	C	G	T
01	0.109	0.008	0.592	0.29
02	0.097	0.109	0.748	0.046
03	0.029	0.429	0.067	0.475
04	0.441	0.08	0.403	0.076
05	0.387	0.109	0.21	0.294
06	0.239	0.025	0.361	0.374
07	0.042	0.496	0.412	0.05
08	0.832	0.088	0.067	0.013
09	0.693	0.025	0.025	0.256
10	0.0	0.0	1.0	0.0
11	0.004	0.0	0.735	0.261
12	0.017	0.017	0.962	0.004
13	0.021	0.025	0.013	0.941
14	0.046	0.013	0.924	0.017
15	0.496	0.298	0.038	0.168
16	0.42	0.181	0.248	0.151
17	0.126	0.193	0.298	0.382
18	0.231	0.13	0.382	0.256
19	0.143	0.202	0.235	0.42
20	0.164	0.176	0.513	0.147

PWM

	A	C	G	T
01	-0.799	-2.894	0.85	0.145
02	-0.915	-0.799	1.081	-1.594
03	-1.984	0.53	-1.254	0.631
04	0.558	-1.095	0.47	-1.145
05	0.428	-0.799	-0.17	0.159
06	-0.042	-2.112	0.361	0.395
07	-1.678	0.674	0.49	-1.516
08	1.186	-1.001	-1.254	-2.634
09	1.005	-2.112	-2.112	0.024
10	-3.795	-3.795	1.369	-3.795
11	-3.247	-3.795	1.064	0.04
12	-2.428	-2.428	1.331	-3.247
13	-2.257	-2.112	-2.634	1.309
14	-1.594	-2.634	1.291	-2.428
15	0.674	0.173	-1.77	-0.386
16	0.51	-0.316	-0.008	-0.488
17	-0.663	-0.251	0.173	0.417
18	-0.077	-0.632	0.417	0.024
19	-0.543	-0.209	-0.059	0.51
20	-0.411	-0.339	0.706	-0.515

Standard thresholds

P-value	Threshold
0.001	3.59811
0.0005	4.66041
0.0001	6.87106