ZNF699.H13INVIVO.0.PSG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF699.H13INVIVO.0.PSG.A
Gene (human)	ZNF699 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	21
Consensus	WbRbRRRGCAGGYRdWRAAGG
GC content	53.21%
Information content (bits; total / per base)	17.7 / 0.843
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	86
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.807	0.916	0.744	0.893	0.785	0.933	17.626	24.292

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 1 experiments	median	0.598	0.595	0.538	0.546	0.519	0.526
GFPIVT, 1 experiments	best	0.598	0.595	0.538	0.546	0.519	0.526

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 2 experiments	median	28.72	0.678	0.557	0.535
GFPIVT, 2 experiments	best	96.108	0.763	0.715	0.657

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF763-like {2.3.3.33} (TFClass)
TFClass ID	TFClass: 2.3.3.33.203
HGNC	HGNC:24750
MGI
EntrezGene (human)	GeneID:374879 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN699_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q32M78 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF699.H13INVIVO.0.PSG.A.pcm
PWM	ZNF699.H13INVIVO.0.PSG.A.pwm
PFM	ZNF699.H13INVIVO.0.PSG.A.pfm
Threshold to P-value map	ZNF699.H13INVIVO.0.PSG.A.thr
Motif in other formats
JASPAR format	ZNF699.H13INVIVO.0.PSG.A_jaspar_format.txt
MEME format	ZNF699.H13INVIVO.0.PSG.A_meme_format.meme
Transfac format	ZNF699.H13INVIVO.0.PSG.A_transfac_format.txt
Homer format	ZNF699.H13INVIVO.0.PSG.A_homer_format_0.001.txt ZNF699.H13INVIVO.0.PSG.A_homer_format_0.0005.txt ZNF699.H13INVIVO.0.PSG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	13.0	10.0	11.0	52.0
02	7.0	39.0	12.0	28.0
03	41.0	3.0	34.0	8.0
04	10.0	51.0	11.0	14.0
05	58.0	10.0	14.0	4.0
06	21.0	8.0	49.0	8.0
07	61.0	1.0	13.0	11.0
08	10.0	3.0	68.0	5.0
09	1.0	78.0	6.0	1.0
10	67.0	2.0	14.0	3.0
11	3.0	0.0	83.0	0.0
12	9.0	6.0	69.0	2.0
13	5.0	55.0	1.0	25.0
14	62.0	3.0	19.0	2.0
15	44.0	11.0	15.0	16.0
16	17.0	3.0	11.0	55.0
17	22.0	7.0	55.0	2.0
18	77.0	4.0	5.0	0.0
19	63.0	2.0	21.0	0.0
20	6.0	2.0	77.0	1.0
21	8.0	2.0	73.0	3.0

PFM

	A	C	G	T
01	0.151	0.116	0.128	0.605
02	0.081	0.453	0.14	0.326
03	0.477	0.035	0.395	0.093
04	0.116	0.593	0.128	0.163
05	0.674	0.116	0.163	0.047
06	0.244	0.093	0.57	0.093
07	0.709	0.012	0.151	0.128
08	0.116	0.035	0.791	0.058
09	0.012	0.907	0.07	0.012
10	0.779	0.023	0.163	0.035
11	0.035	0.0	0.965	0.0
12	0.105	0.07	0.802	0.023
13	0.058	0.64	0.012	0.291
14	0.721	0.035	0.221	0.023
15	0.512	0.128	0.174	0.186
16	0.198	0.035	0.128	0.64
17	0.256	0.081	0.64	0.023
18	0.895	0.047	0.058	0.0
19	0.733	0.023	0.244	0.0
20	0.07	0.023	0.895	0.012
21	0.093	0.023	0.849	0.035

PWM

	A	C	G	T
01	-0.471	-0.71	-0.624	0.854
02	-1.025	0.573	-0.545	0.253
03	0.622	-1.704	0.44	-0.909
04	-0.71	0.835	-0.624	-0.403
05	0.961	-0.71	-0.403	-1.487
06	-0.022	-0.909	0.796	-0.909
07	1.01	-2.37	-0.471	-0.624
08	-0.71	-1.704	1.117	-1.308
09	-2.37	1.252	-1.157	-2.37
10	1.103	-1.983	-0.403	-1.704
11	-1.704	-3.011	1.314	-3.011
12	-0.805	-1.157	1.132	-1.983
13	-1.308	0.909	-2.37	0.144
14	1.026	-1.704	-0.117	-1.983
15	0.691	-0.624	-0.339	-0.279
16	-0.222	-1.704	-0.624	0.909
17	0.022	-1.025	0.909	-1.983
18	1.24	-1.487	-1.308	-3.011
19	1.042	-1.983	-0.022	-3.011
20	-1.157	-1.983	1.24	-2.37
21	-0.909	-1.983	1.187	-1.704

Standard thresholds

P-value	Threshold
0.001	3.11211
0.0005	4.16771
0.0001	6.41271