ZNF70.H13INVITRO.0.PSG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF70.H13INVITRO.0.PSG.A
Gene (human)	ZNF70 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	25
Consensus	nbhvnCCTCCYhdSSWTAGACCnhn
GC content	55.47%
Information content (bits; total / per base)	23.879 / 0.955
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	597
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.721	0.722	0.581	0.584	0.7	0.726	25.472	30.222

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 1 experiments	median	0.788	0.796	0.645	0.663	0.572	0.595
GFPIVT, 1 experiments	best	0.788	0.796	0.645	0.663	0.572	0.595

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 1 experiments	median	56.569	0.827	0.856	0.75
GFPIVT, 1 experiments	best	218.268	0.83	0.866	0.808

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.121
HGNC	HGNC:13140
MGI
EntrezGene (human)	GeneID:7621 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZNF70_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q9UC06 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF70.H13INVITRO.0.PSG.A.pcm
PWM	ZNF70.H13INVITRO.0.PSG.A.pwm
PFM	ZNF70.H13INVITRO.0.PSG.A.pfm
Threshold to P-value map	ZNF70.H13INVITRO.0.PSG.A.thr
Motif in other formats
JASPAR format	ZNF70.H13INVITRO.0.PSG.A_jaspar_format.txt
MEME format	ZNF70.H13INVITRO.0.PSG.A_meme_format.meme
Transfac format	ZNF70.H13INVITRO.0.PSG.A_transfac_format.txt
Homer format	ZNF70.H13INVITRO.0.PSG.A_homer_format_0.001.txt ZNF70.H13INVITRO.0.PSG.A_homer_format_0.0005.txt ZNF70.H13INVITRO.0.PSG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	117.75	254.75	106.75	117.75
02	100.5	265.5	107.5	123.5
03	71.0	318.0	57.0	151.0
04	223.0	135.0	211.0	28.0
05	113.0	65.0	113.0	306.0
06	3.0	591.0	2.0	1.0
07	1.0	596.0	0.0	0.0
08	2.0	2.0	0.0	593.0
09	0.0	591.0	0.0	6.0
10	1.0	595.0	1.0	0.0
11	18.0	158.0	4.0	417.0
12	168.0	141.0	16.0	272.0
13	47.0	44.0	230.0	276.0
14	75.0	418.0	94.0	10.0
15	34.0	185.0	371.0	7.0
16	411.0	55.0	12.0	119.0
17	17.0	54.0	6.0	520.0
18	504.0	66.0	3.0	24.0
19	10.0	23.0	492.0	72.0
20	537.0	13.0	31.0	16.0
21	5.0	562.0	0.0	30.0
22	4.0	590.0	1.0	2.0
23	135.0	135.0	31.0	296.0
24	75.75	189.75	34.75	296.75
25	111.75	154.75	152.75	177.75

PFM

	A	C	G	T
01	0.197	0.427	0.179	0.197
02	0.168	0.445	0.18	0.207
03	0.119	0.533	0.095	0.253
04	0.374	0.226	0.353	0.047
05	0.189	0.109	0.189	0.513
06	0.005	0.99	0.003	0.002
07	0.002	0.998	0.0	0.0
08	0.003	0.003	0.0	0.993
09	0.0	0.99	0.0	0.01
10	0.002	0.997	0.002	0.0
11	0.03	0.265	0.007	0.698
12	0.281	0.236	0.027	0.456
13	0.079	0.074	0.385	0.462
14	0.126	0.7	0.157	0.017
15	0.057	0.31	0.621	0.012
16	0.688	0.092	0.02	0.199
17	0.028	0.09	0.01	0.871
18	0.844	0.111	0.005	0.04
19	0.017	0.039	0.824	0.121
20	0.899	0.022	0.052	0.027
21	0.008	0.941	0.0	0.05
22	0.007	0.988	0.002	0.003
23	0.226	0.226	0.052	0.496
24	0.127	0.318	0.058	0.497
25	0.187	0.259	0.256	0.298

PWM

	A	C	G	T
01	-0.234	0.53	-0.331	-0.234
02	-0.39	0.571	-0.324	-0.187
03	-0.731	0.751	-0.946	0.012
04	0.398	-0.099	0.343	-1.629
05	-0.275	-0.818	-0.275	0.713
06	-3.491	1.368	-3.736	-4.062
07	-4.062	1.377	-4.548	-4.548
08	-3.736	-3.736	-4.548	1.372
09	-4.548	1.368	-4.548	-2.988
10	-4.062	1.375	-4.062	-4.548
11	-2.041	0.056	-3.294	1.021
12	0.117	-0.056	-2.148	0.595
13	-1.133	-1.196	0.429	0.61
14	-0.678	1.023	-0.456	-2.565
15	-1.444	0.213	0.904	-2.865
16	1.006	-0.98	-2.406	-0.224
17	-2.093	-0.998	-2.988	1.241
18	1.209	-0.803	-3.491	-1.774
19	-2.565	-1.814	1.185	-0.718
20	1.273	-2.335	-1.532	-2.148
21	-3.13	1.318	-4.548	-1.563
22	-3.294	1.367	-4.062	-3.736
23	-0.099	-0.099	-1.532	0.679
24	-0.668	0.238	-1.423	0.682
25	-0.286	0.036	0.023	0.173

Standard thresholds

P-value	Threshold
0.001	-2.32399
0.0005	-0.68094
0.0001	2.81201