| Motif | ZNF70.H13INVIVO.0.PSG.A |
| Gene (human) | ZNF70 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | A |
| Motif | ZNF70.H13INVIVO.0.PSG.A |
| Gene (human) | ZNF70 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | A |
| Motif length | 10 |
| Consensus | YChCCTCCYh |
| GC content | 63.27% |
| Information content (bits; total / per base) | 12.152 / 1.215 |
| Data sources | ChIP-Seq + HT-SELEX + Genomic HT-SELEX |
| Aligned words | 1000 |
| Previous names |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|
| Overall | 2 (2) | 0.794 | 0.818 | 0.651 | 0.686 | 0.814 | 0.845 | 88.418 | 118.367 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| GFPIVT, 1 experiments | median | 0.671 | 0.611 | 0.59 | 0.572 | 0.551 | 0.546 |
| best | 0.671 | 0.611 | 0.59 | 0.572 | 0.551 | 0.546 | |
| Genomic HT-SELEX benchmarking | Centrality | pseudo-auROC | auROC | auPR | |
|---|---|---|---|---|---|
| GFPIVT, 1 experiments | median | 25.357 | 0.643 | 0.773 | 0.66 |
| best | 99.699 | 0.673 | 0.833 | 0.689 | |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | C2H2 zinc finger factors {2.3} (TFClass) |
| TF family | More than 3 adjacent zinc fingers {2.3.3} (TFClass) |
| TF subfamily | Unclassified {2.3.3.0} (TFClass) |
| TFClass ID | TFClass: 2.3.3.0.121 |
| HGNC | HGNC:13140 |
| MGI | |
| EntrezGene (human) | GeneID:7621 (SSTAR profile) |
| EntrezGene (mouse) | |
| UniProt ID (human) | ZNF70_HUMAN |
| UniProt ID (mouse) | |
| UniProt AC (human) | Q9UC06 (TFClass) |
| UniProt AC (mouse) | |
| GRECO-DB-TF | yes |
| ChIP-Seq | 2 human, 0 mouse |
| HT-SELEX | 1 overall: 0 Lysate, 0 IVT, 1 GFPIVT |
| Genomic HT-SELEX | 1 overall: 0 Lysate, 0 IVT, 1 GFPIVT |
| SMiLE-Seq | 0 |
| PBM | 0 |
| PCM | ZNF70.H13INVIVO.0.PSG.A.pcm |
| PWM | ZNF70.H13INVIVO.0.PSG.A.pwm |
| PFM | ZNF70.H13INVIVO.0.PSG.A.pfm |
| Threshold to P-value map | ZNF70.H13INVIVO.0.PSG.A.thr |
| Motif in other formats | |
| JASPAR format | ZNF70.H13INVIVO.0.PSG.A_jaspar_format.txt |
| MEME format | ZNF70.H13INVIVO.0.PSG.A_meme_format.meme |
| Transfac format | ZNF70.H13INVIVO.0.PSG.A_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 26.0 | 214.0 | 21.0 | 739.0 |
| 02 | 159.0 | 822.0 | 11.0 | 8.0 |
| 03 | 369.0 | 404.0 | 36.0 | 191.0 |
| 04 | 20.0 | 950.0 | 16.0 | 14.0 |
| 05 | 6.0 | 976.0 | 5.0 | 13.0 |
| 06 | 9.0 | 0.0 | 6.0 | 985.0 |
| 07 | 1.0 | 964.0 | 10.0 | 25.0 |
| 08 | 4.0 | 978.0 | 2.0 | 16.0 |
| 09 | 111.0 | 427.0 | 15.0 | 447.0 |
| 10 | 117.0 | 389.0 | 81.0 | 413.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.026 | 0.214 | 0.021 | 0.739 |
| 02 | 0.159 | 0.822 | 0.011 | 0.008 |
| 03 | 0.369 | 0.404 | 0.036 | 0.191 |
| 04 | 0.02 | 0.95 | 0.016 | 0.014 |
| 05 | 0.006 | 0.976 | 0.005 | 0.013 |
| 06 | 0.009 | 0.0 | 0.006 | 0.985 |
| 07 | 0.001 | 0.964 | 0.01 | 0.025 |
| 08 | 0.004 | 0.978 | 0.002 | 0.016 |
| 09 | 0.111 | 0.427 | 0.015 | 0.447 |
| 10 | 0.117 | 0.389 | 0.081 | 0.413 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -2.206 | -0.154 | -2.405 | 1.079 |
| 02 | -0.449 | 1.185 | -2.985 | -3.253 |
| 03 | 0.387 | 0.477 | -1.898 | -0.267 |
| 04 | -2.45 | 1.33 | -2.653 | -2.773 |
| 05 | -3.484 | 1.357 | -3.622 | -2.839 |
| 06 | -3.156 | -4.982 | -3.484 | 1.366 |
| 07 | -4.525 | 1.345 | -3.066 | -2.243 |
| 08 | -3.783 | 1.359 | -4.213 | -2.653 |
| 09 | -0.803 | 0.532 | -2.711 | 0.578 |
| 10 | -0.752 | 0.44 | -1.113 | 0.499 |
| P-value | Threshold |
|---|---|
| 0.001 | 3.990455 |
| 0.0005 | 5.048425 |
| 0.0001 | 7.19059 |