ZNF700.H13INVITRO.0.PSG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF700.H13INVITRO.0.PSG.A
Gene (human)	ZNF700 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	10
Consensus	dvAYGCAACv
GC content	47.36%
Information content (bits; total / per base)	11.033 / 1.103
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	8651
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.609	0.612	0.475	0.478	0.489	0.495	12.086	12.602

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 3 experiments	median	0.746	0.712	0.656	0.635	0.599	0.59
GFPIVT, 3 experiments	best	0.87	0.849	0.743	0.729	0.652	0.651

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 1 experiments	median	0.0	0.22	0.345	0.253
GFPIVT, 1 experiments	best	0.921	0.349	0.437	0.291

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.212
HGNC	HGNC:25292
MGI
EntrezGene (human)	GeneID:90592 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN700_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q9H0M5 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	3 overall: 0 Lysate, 0 IVT, 3 GFPIVT
Genomic HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF700.H13INVITRO.0.PSG.A.pcm
PWM	ZNF700.H13INVITRO.0.PSG.A.pwm
PFM	ZNF700.H13INVITRO.0.PSG.A.pfm
Threshold to P-value map	ZNF700.H13INVITRO.0.PSG.A.thr
Motif in other formats
JASPAR format	ZNF700.H13INVITRO.0.PSG.A_jaspar_format.txt
MEME format	ZNF700.H13INVITRO.0.PSG.A_meme_format.meme
Transfac format	ZNF700.H13INVITRO.0.PSG.A_transfac_format.txt
Homer format	ZNF700.H13INVITRO.0.PSG.A_homer_format_0.001.txt ZNF700.H13INVITRO.0.PSG.A_homer_format_0.0005.txt ZNF700.H13INVITRO.0.PSG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	1606.25	1220.25	1422.25	4402.25
02	2620.0	1004.0	4296.0	731.0
03	6968.0	307.0	971.0	405.0
04	588.0	617.0	519.0	6927.0
05	55.0	99.0	8451.0	46.0
06	97.0	8300.0	179.0	75.0
07	8388.0	14.0	31.0	218.0
08	7917.0	66.0	89.0	579.0
09	121.5	8167.5	211.5	150.5
10	2809.0	2981.0	2026.0	835.0

PFM

	A	C	G	T
01	0.186	0.141	0.164	0.509
02	0.303	0.116	0.497	0.084
03	0.805	0.035	0.112	0.047
04	0.068	0.071	0.06	0.801
05	0.006	0.011	0.977	0.005
06	0.011	0.959	0.021	0.009
07	0.97	0.002	0.004	0.025
08	0.915	0.008	0.01	0.067
09	0.014	0.944	0.024	0.017
10	0.325	0.345	0.234	0.097

PWM

	A	C	G	T
01	-0.297	-0.572	-0.419	0.71
02	0.192	-0.766	0.686	-1.083
03	1.169	-1.946	-0.8	-1.671
04	-1.3	-1.252	-1.424	1.163
05	-3.632	-3.062	1.362	-3.803
06	-3.082	1.344	-2.48	-3.333
07	1.355	-4.891	-4.176	-2.285
08	1.297	-3.457	-3.166	-1.315
09	-2.862	1.328	-2.315	-2.651
10	0.261	0.321	-0.065	-0.95

Standard thresholds

P-value	Threshold
0.001	4.37363
0.0005	5.34711
0.0001	7.26531