ZNF709.H13INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF709.H13INVITRO.0.P.D
Gene (human)	ZNF709 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	21
Consensus	vRWGdYhSWGRARGhRvdRAG
GC content	55.93%
Information content (bits; total / per base)	15.174 / 0.723
Data sources	ChIP-Seq
Aligned words	133
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	1 (1)	0.79	0.79	0.768	0.768	0.836	0.836	16.959	16.959

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF14-like {2.3.3.78} (TFClass)
TFClass ID	TFClass: 2.3.3.78.2
HGNC	HGNC:20629
MGI
EntrezGene (human)	GeneID:163051 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN709_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q8N972 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF709.H13INVITRO.0.P.D.pcm
PWM	ZNF709.H13INVITRO.0.P.D.pwm
PFM	ZNF709.H13INVITRO.0.P.D.pfm
Threshold to P-value map	ZNF709.H13INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZNF709.H13INVITRO.0.P.D_jaspar_format.txt
MEME format	ZNF709.H13INVITRO.0.P.D_meme_format.meme
Transfac format	ZNF709.H13INVITRO.0.P.D_transfac_format.txt
Homer format	ZNF709.H13INVITRO.0.P.D_homer_format_0.001.txt ZNF709.H13INVITRO.0.P.D_homer_format_0.0005.txt ZNF709.H13INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	20.0	25.0	73.0	15.0
02	22.0	4.0	98.0	9.0
03	100.0	5.0	11.0	17.0
04	19.0	5.0	106.0	3.0
05	21.0	15.0	40.0	57.0
06	9.0	88.0	11.0	25.0
07	21.0	77.0	10.0	25.0
08	16.0	91.0	22.0	4.0
09	96.0	8.0	6.0	23.0
10	13.0	6.0	107.0	7.0
11	84.0	8.0	38.0	3.0
12	110.0	6.0	11.0	6.0
13	16.0	6.0	103.0	8.0
14	25.0	0.0	105.0	3.0
15	74.0	18.0	14.0	27.0
16	23.0	6.0	86.0	18.0
17	66.0	34.0	26.0	7.0
18	49.0	15.0	39.0	30.0
19	16.0	15.0	99.0	3.0
20	121.0	0.0	10.0	2.0
21	11.0	5.0	110.0	7.0

PFM

	A	C	G	T
01	0.15	0.188	0.549	0.113
02	0.165	0.03	0.737	0.068
03	0.752	0.038	0.083	0.128
04	0.143	0.038	0.797	0.023
05	0.158	0.113	0.301	0.429
06	0.068	0.662	0.083	0.188
07	0.158	0.579	0.075	0.188
08	0.12	0.684	0.165	0.03
09	0.722	0.06	0.045	0.173
10	0.098	0.045	0.805	0.053
11	0.632	0.06	0.286	0.023
12	0.827	0.045	0.083	0.045
13	0.12	0.045	0.774	0.06
14	0.188	0.0	0.789	0.023
15	0.556	0.135	0.105	0.203
16	0.173	0.045	0.647	0.135
17	0.496	0.256	0.195	0.053
18	0.368	0.113	0.293	0.226
19	0.12	0.113	0.744	0.023
20	0.91	0.0	0.075	0.015
21	0.083	0.038	0.827	0.053

PWM

	A	C	G	T
01	-0.485	-0.274	0.767	-0.754
02	-0.395	-1.887	1.057	-1.216
03	1.077	-1.712	-1.037	-0.638
04	-0.533	-1.712	1.135	-2.1
05	-0.439	-0.754	0.179	0.524
06	-1.216	0.951	-1.037	-0.274
07	-0.439	0.819	-1.122	-0.274
08	-0.694	0.984	-0.395	-1.887
09	1.037	-1.319	-1.563	-0.353
10	-0.885	-1.563	1.144	-1.433
11	0.905	-1.319	0.129	-2.1
12	1.171	-1.563	-1.037	-1.563
13	-0.694	-1.563	1.106	-1.319
14	-0.274	-3.339	1.125	-2.1
15	0.78	-0.584	-0.817	-0.2
16	-0.353	-1.563	0.928	-0.584
17	0.668	0.022	-0.236	-1.433
18	0.376	-0.754	0.154	-0.099
19	-0.694	-0.754	1.067	-2.1
20	1.266	-3.339	-1.122	-2.37
21	-1.037	-1.712	1.171	-1.433

Standard thresholds

P-value	Threshold
0.001	3.73191
0.0005	4.68891
0.0001	6.72781