ZNF721.H13INVITRO.0.PSG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF721.H13INVITRO.0.PSG.A
Gene (human)	ZNF721 (GeneCards)
Gene synonyms (human)	KIAA1982
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	18
Consensus	vRvRAARCAGbRKhnCCW
GC content	44.54%
Information content (bits; total / per base)	16.914 / 0.94
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	292
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	4 (4)	0.795	0.83	0.61	0.66	0.847	0.902	80.759	95.824

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 3 experiments	median	0.91	0.896	0.827	0.793	0.719	0.706
GFPIVT, 3 experiments	best	1.0	1.0	0.999	0.999	0.995	0.993

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 3 experiments	median	235.523	0.919	0.756	0.563
GFPIVT, 3 experiments	best	763.959	0.98	0.933	0.838

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF595-like {2.3.3.77} (TFClass)
TFClass ID	TFClass: 2.3.3.77.2
HGNC	HGNC:29425
MGI
EntrezGene (human)	GeneID:170960 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN721_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q8TF20 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	4 human, 0 mouse
HT-SELEX	3 overall: 0 Lysate, 0 IVT, 3 GFPIVT
Genomic HT-SELEX	3 overall: 0 Lysate, 0 IVT, 3 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF721.H13INVITRO.0.PSG.A.pcm
PWM	ZNF721.H13INVITRO.0.PSG.A.pwm
PFM	ZNF721.H13INVITRO.0.PSG.A.pfm
Threshold to P-value map	ZNF721.H13INVITRO.0.PSG.A.thr
Motif in other formats
JASPAR format	ZNF721.H13INVITRO.0.PSG.A_jaspar_format.txt
MEME format	ZNF721.H13INVITRO.0.PSG.A_meme_format.meme
Transfac format	ZNF721.H13INVITRO.0.PSG.A_transfac_format.txt
Homer format	ZNF721.H13INVITRO.0.PSG.A_homer_format_0.001.txt ZNF721.H13INVITRO.0.PSG.A_homer_format_0.0005.txt ZNF721.H13INVITRO.0.PSG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	161.0	61.0	54.0	16.0
02	201.0	10.0	57.0	24.0
03	169.0	35.0	58.0	30.0
04	216.0	31.0	41.0	4.0
05	258.0	1.0	33.0	0.0
06	277.0	0.0	1.0	14.0
07	164.0	3.0	124.0	1.0
08	13.0	272.0	2.0	5.0
09	286.0	1.0	5.0	0.0
10	1.0	0.0	291.0	0.0
11	32.0	123.0	50.0	87.0
12	116.0	24.0	146.0	6.0
13	7.0	48.0	66.0	171.0
14	49.0	69.0	35.0	139.0
15	53.0	53.0	44.0	142.0
16	1.0	273.0	4.0	14.0
17	4.0	272.0	7.0	9.0
18	119.0	41.0	6.0	126.0

PFM

	A	C	G	T
01	0.551	0.209	0.185	0.055
02	0.688	0.034	0.195	0.082
03	0.579	0.12	0.199	0.103
04	0.74	0.106	0.14	0.014
05	0.884	0.003	0.113	0.0
06	0.949	0.0	0.003	0.048
07	0.562	0.01	0.425	0.003
08	0.045	0.932	0.007	0.017
09	0.979	0.003	0.017	0.0
10	0.003	0.0	0.997	0.0
11	0.11	0.421	0.171	0.298
12	0.397	0.082	0.5	0.021
13	0.024	0.164	0.226	0.586
14	0.168	0.236	0.12	0.476
15	0.182	0.182	0.151	0.486
16	0.003	0.935	0.014	0.048
17	0.014	0.932	0.024	0.031
18	0.408	0.14	0.021	0.432

PWM

	A	C	G	T
01	0.78	-0.176	-0.295	-1.452
02	1.001	-1.874	-0.242	-1.074
03	0.829	-0.715	-0.225	-0.862
04	1.072	-0.831	-0.562	-2.62
05	1.249	-3.426	-0.771	-3.96
06	1.319	-3.96	-3.426	-1.574
07	0.799	-2.824	0.522	-3.426
08	-1.641	1.301	-3.08	-2.45
09	1.351	-3.426	-2.45	-3.96
10	-3.426	-3.96	1.368	-3.96
11	-0.801	0.514	-0.37	0.172
12	0.456	-1.074	0.684	-2.306
13	-2.179	-0.409	-0.099	0.84
14	-0.389	-0.055	-0.715	0.635
15	-0.313	-0.313	-0.494	0.656
16	-3.426	1.305	-2.62	-1.574
17	-2.62	1.301	-2.179	-1.966
18	0.481	-0.562	-2.306	0.538

Standard thresholds

P-value	Threshold
0.001	2.37561
0.0005	3.60656
0.0001	6.18996