ZNF724.H13CORE.0.PSG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF724.H13CORE.0.PSG.A
Gene (human)	ZNF724 (GeneCards)
Gene synonyms (human)	ZNF724P
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	19
Consensus	hYKRCdTRCTTGGACTTdv
GC content	49.75%
Information content (bits; total / per base)	21.581 / 1.136
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	9095
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.916	0.953	0.904	0.945	0.858	0.951	173.87	177.854

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 2 experiments	median	1.0	1.0	0.996	0.994	0.905	0.913
GFPIVT, 2 experiments	best	1.0	1.0	0.999	0.998	0.956	0.956

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
overall, 4 experiments	median	140.968	0.791	0.813	0.838
overall, 4 experiments	best	814.921	0.962	0.974	0.963
Lysate, 2 experiments	median	58.739	0.6	0.64	0.685
Lysate, 2 experiments	best	89.215	0.679	0.706	0.764
GFPIVT, 2 experiments	median	530.738	0.929	0.952	0.941
GFPIVT, 2 experiments	best	814.921	0.962	0.974	0.963

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.201
HGNC	HGNC:32460
MGI
EntrezGene (human)
EntrezGene (mouse)
UniProt ID (human)	ZN724_HUMAN
UniProt ID (mouse)
UniProt AC (human)	A8MTY0 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
Genomic HT-SELEX	4 overall: 2 Lysate, 0 IVT, 2 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF724.H13CORE.0.PSG.A.pcm
PWM	ZNF724.H13CORE.0.PSG.A.pwm
PFM	ZNF724.H13CORE.0.PSG.A.pfm
Threshold to P-value map	ZNF724.H13CORE.0.PSG.A.thr
Motif in other formats
JASPAR format	ZNF724.H13CORE.0.PSG.A_jaspar_format.txt
MEME format	ZNF724.H13CORE.0.PSG.A_meme_format.meme
Transfac format	ZNF724.H13CORE.0.PSG.A_transfac_format.txt
Homer format	ZNF724.H13CORE.0.PSG.A_homer_format_0.001.txt ZNF724.H13CORE.0.PSG.A_homer_format_0.0005.txt ZNF724.H13CORE.0.PSG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	4661.25	2625.25	813.25	995.25
02	688.0	7037.0	487.0	883.0
03	646.0	713.0	6809.0	927.0
04	5264.0	498.0	2173.0	1160.0
05	295.0	7466.0	345.0	989.0
06	3429.0	605.0	4274.0	787.0
07	411.0	327.0	553.0	7804.0
08	4252.0	123.0	4624.0	96.0
09	8.0	9013.0	31.0	43.0
10	122.0	59.0	77.0	8837.0
11	4.0	4.0	2.0	9085.0
12	488.0	98.0	8298.0	211.0
13	188.0	11.0	8887.0	9.0
14	8076.0	162.0	749.0	108.0
15	110.0	8732.0	83.0	170.0
16	246.0	280.0	406.0	8163.0
17	70.0	128.0	94.0	8803.0
18	836.0	809.0	3742.0	3708.0
19	3335.0	1414.0	3427.0	919.0

PFM

	A	C	G	T
01	0.513	0.289	0.089	0.109
02	0.076	0.774	0.054	0.097
03	0.071	0.078	0.749	0.102
04	0.579	0.055	0.239	0.128
05	0.032	0.821	0.038	0.109
06	0.377	0.067	0.47	0.087
07	0.045	0.036	0.061	0.858
08	0.468	0.014	0.508	0.011
09	0.001	0.991	0.003	0.005
10	0.013	0.006	0.008	0.972
11	0.0	0.0	0.0	0.999
12	0.054	0.011	0.912	0.023
13	0.021	0.001	0.977	0.001
14	0.888	0.018	0.082	0.012
15	0.012	0.96	0.009	0.019
16	0.027	0.031	0.045	0.898
17	0.008	0.014	0.01	0.968
18	0.092	0.089	0.411	0.408
19	0.367	0.155	0.377	0.101

PWM

	A	C	G	T
01	0.717	0.144	-1.026	-0.825
02	-1.193	1.129	-1.537	-0.944
03	-1.256	-1.158	1.096	-0.896
04	0.839	-1.515	-0.045	-0.672
05	-2.036	1.188	-1.88	-0.831
06	0.411	-1.321	0.631	-1.059
07	-1.706	-1.933	-1.411	1.232
08	0.625	-2.9	0.709	-3.142
09	-5.4	1.376	-4.225	-3.917
10	-2.908	-3.615	-3.357	1.357
11	-5.893	-5.893	-6.276	1.384
12	-1.535	-3.122	1.294	-2.368
13	-2.482	-5.144	1.362	-5.307
14	1.267	-2.629	-1.108	-3.027
15	-3.009	1.345	-3.284	-2.581
16	-2.216	-2.087	-1.718	1.277
17	-3.45	-2.861	-3.163	1.353
18	-0.999	-1.032	0.498	0.489
19	0.383	-0.474	0.41	-0.904

Standard thresholds

P-value	Threshold
0.001	-1.06249
0.0005	0.50041
0.0001	3.79941