ZNF726.H13INVIVO.0.PSGI.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF726.H13INVIVO.0.PSGI.A
Gene (human)	ZNF726 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	21
Consensus	dnRvhvTRGRKATTGCTTRnb
GC content	44.87%
Information content (bits; total / per base)	20.016 / 0.953
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX + SMiLe-Seq
Aligned words	2072
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.931	0.961	0.905	0.93	0.926	0.964	39.502	57.18

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 2 experiments	median	1.0	1.0	0.998	0.998	0.953	0.957
GFPIVT, 2 experiments	best	1.0	1.0	0.999	0.999	0.996	0.996

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 2 experiments	median	443.835	0.913	0.927	0.89
GFPIVT, 2 experiments	best	672.108	0.933	0.959	0.93

SMiLE-Seq benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 1 experiments	median	0.657	0.625	0.584	0.574	0.543	0.545
Overall, 1 experiments	best	0.657	0.625	0.584	0.574	0.543	0.545

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.226
HGNC	HGNC:32462
MGI
EntrezGene (human)	GeneID:730087 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN726_HUMAN
UniProt ID (mouse)
UniProt AC (human)	A6NNF4 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
Genomic HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
SMiLE-Seq	1
PBM	0

PCM	ZNF726.H13INVIVO.0.PSGI.A.pcm
PWM	ZNF726.H13INVIVO.0.PSGI.A.pwm
PFM	ZNF726.H13INVIVO.0.PSGI.A.pfm
Threshold to P-value map	ZNF726.H13INVIVO.0.PSGI.A.thr
Motif in other formats
JASPAR format	ZNF726.H13INVIVO.0.PSGI.A_jaspar_format.txt
MEME format	ZNF726.H13INVIVO.0.PSGI.A_meme_format.meme
Transfac format	ZNF726.H13INVIVO.0.PSGI.A_transfac_format.txt
Homer format	ZNF726.H13INVIVO.0.PSGI.A_homer_format_0.001.txt ZNF726.H13INVIVO.0.PSGI.A_homer_format_0.0005.txt ZNF726.H13INVIVO.0.PSGI.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	944.5	296.5	372.5	458.5
02	385.25	759.25	427.25	500.25
03	245.0	111.0	1493.0	223.0
04	356.0	923.0	506.0	287.0
05	681.0	950.0	177.0	264.0
06	338.0	742.0	731.0	261.0
07	107.0	70.0	86.0	1809.0
08	1421.0	32.0	505.0	114.0
09	23.0	19.0	1983.0	47.0
10	822.0	10.0	1138.0	102.0
11	4.0	90.0	1350.0	628.0
12	1966.0	25.0	81.0	0.0
13	2.0	0.0	0.0	2070.0
14	0.0	0.0	0.0	2072.0
15	102.0	1.0	1714.0	255.0
16	3.0	2069.0	0.0	0.0
17	2.0	8.0	4.0	2058.0
18	32.0	30.0	98.0	1912.0
19	1045.0	44.0	889.0	94.0
20	344.25	575.25	379.25	773.25
21	269.0	360.0	474.0	969.0

PFM

	A	C	G	T
01	0.456	0.143	0.18	0.221
02	0.186	0.366	0.206	0.241
03	0.118	0.054	0.721	0.108
04	0.172	0.445	0.244	0.139
05	0.329	0.458	0.085	0.127
06	0.163	0.358	0.353	0.126
07	0.052	0.034	0.042	0.873
08	0.686	0.015	0.244	0.055
09	0.011	0.009	0.957	0.023
10	0.397	0.005	0.549	0.049
11	0.002	0.043	0.652	0.303
12	0.949	0.012	0.039	0.0
13	0.001	0.0	0.0	0.999
14	0.0	0.0	0.0	1.0
15	0.049	0.0	0.827	0.123
16	0.001	0.999	0.0	0.0
17	0.001	0.004	0.002	0.993
18	0.015	0.014	0.047	0.923
19	0.504	0.021	0.429	0.045
20	0.166	0.278	0.183	0.373
21	0.13	0.174	0.229	0.468

PWM

	A	C	G	T
01	0.599	-0.555	-0.328	-0.122
02	-0.295	0.381	-0.192	-0.035
03	-0.745	-1.527	1.056	-0.838
04	-0.373	0.576	-0.023	-0.588
05	0.273	0.605	-1.067	-0.67
06	-0.425	0.358	0.343	-0.682
07	-1.563	-1.978	-1.777	1.248
08	1.007	-2.73	-0.025	-1.501
09	-3.038	-3.213	1.34	-2.364
10	0.46	-3.776	0.785	-1.61
11	-4.477	-1.733	0.956	0.192
12	1.331	-2.961	-1.836	-5.607
13	-4.89	-5.607	-5.607	1.383
14	-5.607	-5.607	-5.607	1.384
15	-1.61	-5.186	1.194	-0.705
16	-4.663	1.382	-5.607	-5.607
17	-4.89	-3.96	-4.477	1.377
18	-2.73	-2.791	-1.649	1.303
19	0.7	-2.427	0.539	-1.69
20	-0.407	0.104	-0.31	0.399
21	-0.652	-0.362	-0.088	0.625

Standard thresholds

P-value	Threshold
0.001	-0.90589
0.0005	0.74296
0.0001	4.19456