| Motif | ZNF728.H13INVITRO.0.PSG.A |
| Gene (human) | ZNF728 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Znf728 |
| Gene synonyms (mouse) | Zfp458 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | A |
| Motif | ZNF728.H13INVITRO.0.PSG.A |
| Gene (human) | ZNF728 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Znf728 |
| Gene synonyms (mouse) | Zfp458 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | A |
| Motif length | 26 |
| Consensus | dnhhRGdARCGTTGKdhbvhbhRKdh |
| GC content | 51.97% |
| Information content (bits; total / per base) | 17.604 / 0.677 |
| Data sources | ChIP-Seq + HT-SELEX + Genomic HT-SELEX |
| Aligned words | 1724 |
| Previous names |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|
| Overall | 2 (2) | 0.742 | 0.836 | 0.718 | 0.84 | 0.664 | 0.821 | 72.249 | 117.538 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| GFPIVT, 2 experiments | median | 0.907 | 0.906 | 0.818 | 0.817 | 0.709 | 0.718 |
| best | 0.998 | 0.998 | 0.95 | 0.946 | 0.806 | 0.817 | |
| Genomic HT-SELEX benchmarking | Centrality | pseudo-auROC | auROC | auPR | |
|---|---|---|---|---|---|
| GFPIVT, 2 experiments | median | 136.015 | 0.695 | 0.749 | 0.72 |
| best | 269.456 | 0.842 | 0.861 | 0.861 | |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | C2H2 zinc finger factors {2.3} (TFClass) |
| TF family | More than 3 adjacent zinc fingers {2.3.3} (TFClass) |
| TF subfamily | Unclassified {2.3.3.0} (TFClass) |
| TFClass ID | TFClass: 2.3.3.0.238 |
| HGNC | HGNC:32463 |
| MGI | MGI:3040691 |
| EntrezGene (human) | GeneID:388523 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:238690 (SSTAR profile) |
| UniProt ID (human) | ZN728_HUMAN |
| UniProt ID (mouse) | ZN728_MOUSE |
| UniProt AC (human) | P0DKX0 (TFClass) |
| UniProt AC (mouse) | Q6P5C7 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 2 human, 0 mouse |
| HT-SELEX | 2 overall: 0 Lysate, 0 IVT, 2 GFPIVT |
| Genomic HT-SELEX | 2 overall: 0 Lysate, 0 IVT, 2 GFPIVT |
| SMiLE-Seq | 0 |
| PBM | 0 |
| PCM | ZNF728.H13INVITRO.0.PSG.A.pcm |
| PWM | ZNF728.H13INVITRO.0.PSG.A.pwm |
| PFM | ZNF728.H13INVITRO.0.PSG.A.pfm |
| Threshold to P-value map | ZNF728.H13INVITRO.0.PSG.A.thr |
| Motif in other formats | |
| JASPAR format | ZNF728.H13INVITRO.0.PSG.A_jaspar_format.txt |
| MEME format | ZNF728.H13INVITRO.0.PSG.A_meme_format.meme |
| Transfac format | ZNF728.H13INVITRO.0.PSG.A_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 428.0 | 219.0 | 813.0 | 264.0 |
| 02 | 521.25 | 391.25 | 454.25 | 357.25 |
| 03 | 223.0 | 323.0 | 206.0 | 972.0 |
| 04 | 648.0 | 552.0 | 163.0 | 361.0 |
| 05 | 462.0 | 100.0 | 1057.0 | 105.0 |
| 06 | 58.0 | 61.0 | 1387.0 | 218.0 |
| 07 | 241.0 | 109.0 | 989.0 | 385.0 |
| 08 | 1585.0 | 42.0 | 48.0 | 49.0 |
| 09 | 169.0 | 83.0 | 1366.0 | 106.0 |
| 10 | 10.0 | 1695.0 | 15.0 | 4.0 |
| 11 | 8.0 | 3.0 | 1713.0 | 0.0 |
| 12 | 2.0 | 0.0 | 0.0 | 1722.0 |
| 13 | 87.0 | 26.0 | 11.0 | 1600.0 |
| 14 | 68.0 | 4.0 | 1638.0 | 14.0 |
| 15 | 55.0 | 45.0 | 897.0 | 727.0 |
| 16 | 586.0 | 140.0 | 674.0 | 324.0 |
| 17 | 680.0 | 318.0 | 190.0 | 536.0 |
| 18 | 161.0 | 493.0 | 644.0 | 426.0 |
| 19 | 549.0 | 224.0 | 752.0 | 199.0 |
| 20 | 856.0 | 469.0 | 195.0 | 204.0 |
| 21 | 136.0 | 750.0 | 256.0 | 582.0 |
| 22 | 795.0 | 257.0 | 198.0 | 474.0 |
| 23 | 261.0 | 117.0 | 1161.0 | 185.0 |
| 24 | 151.0 | 93.0 | 763.0 | 717.0 |
| 25 | 828.5 | 175.5 | 413.5 | 306.5 |
| 26 | 766.5 | 391.5 | 209.5 | 356.5 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.248 | 0.127 | 0.472 | 0.153 |
| 02 | 0.302 | 0.227 | 0.263 | 0.207 |
| 03 | 0.129 | 0.187 | 0.119 | 0.564 |
| 04 | 0.376 | 0.32 | 0.095 | 0.209 |
| 05 | 0.268 | 0.058 | 0.613 | 0.061 |
| 06 | 0.034 | 0.035 | 0.805 | 0.126 |
| 07 | 0.14 | 0.063 | 0.574 | 0.223 |
| 08 | 0.919 | 0.024 | 0.028 | 0.028 |
| 09 | 0.098 | 0.048 | 0.792 | 0.061 |
| 10 | 0.006 | 0.983 | 0.009 | 0.002 |
| 11 | 0.005 | 0.002 | 0.994 | 0.0 |
| 12 | 0.001 | 0.0 | 0.0 | 0.999 |
| 13 | 0.05 | 0.015 | 0.006 | 0.928 |
| 14 | 0.039 | 0.002 | 0.95 | 0.008 |
| 15 | 0.032 | 0.026 | 0.52 | 0.422 |
| 16 | 0.34 | 0.081 | 0.391 | 0.188 |
| 17 | 0.394 | 0.184 | 0.11 | 0.311 |
| 18 | 0.093 | 0.286 | 0.374 | 0.247 |
| 19 | 0.318 | 0.13 | 0.436 | 0.115 |
| 20 | 0.497 | 0.272 | 0.113 | 0.118 |
| 21 | 0.079 | 0.435 | 0.148 | 0.338 |
| 22 | 0.461 | 0.149 | 0.115 | 0.275 |
| 23 | 0.151 | 0.068 | 0.673 | 0.107 |
| 24 | 0.088 | 0.054 | 0.443 | 0.416 |
| 25 | 0.481 | 0.102 | 0.24 | 0.178 |
| 26 | 0.445 | 0.227 | 0.122 | 0.207 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.007 | -0.673 | 0.633 | -0.487 |
| 02 | 0.189 | -0.096 | 0.052 | -0.187 |
| 03 | -0.655 | -0.287 | -0.734 | 0.811 |
| 04 | 0.406 | 0.246 | -0.965 | -0.176 |
| 05 | 0.069 | -1.447 | 0.895 | -1.399 |
| 06 | -1.978 | -1.929 | 1.166 | -0.677 |
| 07 | -0.578 | -1.362 | 0.828 | -0.112 |
| 08 | 1.299 | -2.289 | -2.161 | -2.141 |
| 09 | -0.93 | -1.629 | 1.151 | -1.39 |
| 10 | -3.597 | 1.366 | -3.245 | -4.302 |
| 11 | -3.782 | -4.489 | 1.377 | -5.448 |
| 12 | -4.719 | -5.448 | -5.448 | 1.382 |
| 13 | -1.583 | -2.743 | -3.516 | 1.309 |
| 14 | -1.824 | -4.302 | 1.332 | -3.306 |
| 15 | -2.03 | -2.223 | 0.731 | 0.521 |
| 16 | 0.306 | -1.116 | 0.446 | -0.284 |
| 17 | 0.454 | -0.303 | -0.814 | 0.217 |
| 18 | -0.978 | 0.134 | 0.4 | -0.012 |
| 19 | 0.241 | -0.65 | 0.555 | -0.768 |
| 20 | 0.684 | 0.084 | -0.788 | -0.743 |
| 21 | -1.144 | 0.552 | -0.518 | 0.299 |
| 22 | 0.61 | -0.514 | -0.773 | 0.095 |
| 23 | -0.499 | -1.292 | 0.988 | -0.84 |
| 24 | -1.041 | -1.518 | 0.569 | 0.507 |
| 25 | 0.651 | -0.892 | -0.041 | -0.339 |
| 26 | 0.574 | -0.096 | -0.717 | -0.189 |
| P-value | Threshold |
|---|---|
| 0.001 | 1.68301 |
| 0.0005 | 3.01156 |
| 0.0001 | 5.78106 |