| Motif | ZNF729.H13CORE.0.SG.A |
| Gene (human) | ZNF729 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | A |
| Motif | ZNF729.H13CORE.0.SG.A |
| Gene (human) | ZNF729 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | A |
| Motif length | 12 |
| Consensus | dbTGCGGCASbv |
| GC content | 66.32% |
| Information content (bits; total / per base) | 14.331 / 1.194 |
| Data sources | HT-SELEX + Genomic HT-SELEX |
| Aligned words | 1638 |
| Previous names |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| GFPIVT, 2 experiments | median | 0.929 | 0.898 | 0.875 | 0.847 | 0.791 | 0.775 |
| best | 0.975 | 0.947 | 0.966 | 0.942 | 0.891 | 0.872 | |
| Genomic HT-SELEX benchmarking | Centrality | pseudo-auROC | auROC | auPR | |
|---|---|---|---|---|---|
| GFPIVT, 3 experiments | median | 100.424 | 0.607 | 0.677 | 0.568 |
| best | 232.119 | 0.674 | 0.79 | 0.703 | |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | C2H2 zinc finger factors {2.3} (TFClass) |
| TF family | More than 3 adjacent zinc fingers {2.3.3} (TFClass) |
| TF subfamily | ZNF99-like {2.3.3.80} (TFClass) |
| TFClass ID | TFClass: 2.3.3.80.2 |
| HGNC | HGNC:32464 |
| MGI | |
| EntrezGene (human) | GeneID:100287226 (SSTAR profile) |
| EntrezGene (mouse) | |
| UniProt ID (human) | ZN729_HUMAN |
| UniProt ID (mouse) | |
| UniProt AC (human) | A6NN14 (TFClass) |
| UniProt AC (mouse) | |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 2 overall: 0 Lysate, 0 IVT, 2 GFPIVT |
| Genomic HT-SELEX | 3 overall: 0 Lysate, 0 IVT, 3 GFPIVT |
| SMiLE-Seq | 0 |
| PBM | 0 |
| PCM | ZNF729.H13CORE.0.SG.A.pcm |
| PWM | ZNF729.H13CORE.0.SG.A.pwm |
| PFM | ZNF729.H13CORE.0.SG.A.pfm |
| Threshold to P-value map | ZNF729.H13CORE.0.SG.A.thr |
| Motif in other formats | |
| JASPAR format | ZNF729.H13CORE.0.SG.A_jaspar_format.txt |
| MEME format | ZNF729.H13CORE.0.SG.A_meme_format.meme |
| Transfac format | ZNF729.H13CORE.0.SG.A_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 649.0 | 260.0 | 435.0 | 294.0 |
| 02 | 175.75 | 788.75 | 457.75 | 215.75 |
| 03 | 13.0 | 14.0 | 16.0 | 1595.0 |
| 04 | 16.0 | 0.0 | 1622.0 | 0.0 |
| 05 | 0.0 | 1638.0 | 0.0 | 0.0 |
| 06 | 62.0 | 0.0 | 1576.0 | 0.0 |
| 07 | 0.0 | 0.0 | 1638.0 | 0.0 |
| 08 | 21.0 | 1615.0 | 0.0 | 2.0 |
| 09 | 1638.0 | 0.0 | 0.0 | 0.0 |
| 10 | 141.0 | 388.0 | 959.0 | 150.0 |
| 11 | 274.0 | 300.0 | 380.0 | 684.0 |
| 12 | 431.0 | 311.0 | 637.0 | 259.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.396 | 0.159 | 0.266 | 0.179 |
| 02 | 0.107 | 0.482 | 0.279 | 0.132 |
| 03 | 0.008 | 0.009 | 0.01 | 0.974 |
| 04 | 0.01 | 0.0 | 0.99 | 0.0 |
| 05 | 0.0 | 1.0 | 0.0 | 0.0 |
| 06 | 0.038 | 0.0 | 0.962 | 0.0 |
| 07 | 0.0 | 0.0 | 1.0 | 0.0 |
| 08 | 0.013 | 0.986 | 0.0 | 0.001 |
| 09 | 1.0 | 0.0 | 0.0 | 0.0 |
| 10 | 0.086 | 0.237 | 0.585 | 0.092 |
| 11 | 0.167 | 0.183 | 0.232 | 0.418 |
| 12 | 0.263 | 0.19 | 0.389 | 0.158 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.459 | -0.452 | 0.06 | -0.33 |
| 02 | -0.84 | 0.653 | 0.111 | -0.637 |
| 03 | -3.321 | -3.256 | -3.137 | 1.356 |
| 04 | -3.137 | -5.404 | 1.373 | -5.404 |
| 05 | -5.404 | 1.383 | -5.404 | -5.404 |
| 06 | -1.863 | -5.404 | 1.344 | -5.404 |
| 07 | -5.404 | -5.404 | 1.383 | -5.404 |
| 08 | -2.89 | 1.369 | -5.404 | -4.671 |
| 09 | 1.383 | -5.404 | -5.404 | -5.404 |
| 10 | -1.058 | -0.054 | 0.848 | -0.997 |
| 11 | -0.4 | -0.31 | -0.074 | 0.511 |
| 12 | 0.051 | -0.274 | 0.44 | -0.455 |
| P-value | Threshold |
|---|---|
| 0.001 | 2.048075 |
| 0.0005 | 3.46558 |
| 0.0001 | 6.242935 |