ZNF732.H13INVITRO.0.PSG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF732.H13INVITRO.0.PSG.A
Gene (human)	ZNF732 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	20
Consensus	RSRSCAGTGCCRdRGRvddb
GC content	64.88%
Information content (bits; total / per base)	19.263 / 0.963
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	8509
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.941	0.961	0.912	0.944	0.838	0.889	255.432	341.62

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 2 experiments	median	1.0	1.0	0.945	0.946	0.772	0.798
GFPIVT, 2 experiments	best	1.0	1.0	0.954	0.955	0.777	0.805

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 2 experiments	median	578.49	0.958	0.962	0.954
GFPIVT, 2 experiments	best	929.745	0.974	0.989	0.976

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.194
HGNC	HGNC:37138
MGI
EntrezGene (human)	GeneID:654254 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN732_HUMAN
UniProt ID (mouse)
UniProt AC (human)	B4DXR9 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
Genomic HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF732.H13INVITRO.0.PSG.A.pcm
PWM	ZNF732.H13INVITRO.0.PSG.A.pwm
PFM	ZNF732.H13INVITRO.0.PSG.A.pfm
Threshold to P-value map	ZNF732.H13INVITRO.0.PSG.A.thr
Motif in other formats
JASPAR format	ZNF732.H13INVITRO.0.PSG.A_jaspar_format.txt
MEME format	ZNF732.H13INVITRO.0.PSG.A_meme_format.meme
Transfac format	ZNF732.H13INVITRO.0.PSG.A_transfac_format.txt
Homer format	ZNF732.H13INVITRO.0.PSG.A_homer_format_0.001.txt ZNF732.H13INVITRO.0.PSG.A_homer_format_0.0005.txt ZNF732.H13INVITRO.0.PSG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	2250.5	640.5	4866.5	751.5
02	741.25	5543.25	1270.25	954.25
03	1236.0	531.0	5508.0	1234.0
04	713.0	5362.0	1903.0	531.0
05	24.0	8466.0	5.0	14.0
06	8441.0	33.0	31.0	4.0
07	4.0	75.0	8421.0	9.0
08	2.0	0.0	1.0	8506.0
09	33.0	2.0	8469.0	5.0
10	51.0	6754.0	155.0	1549.0
11	243.0	8217.0	23.0	26.0
12	4895.0	782.0	2394.0	438.0
13	4417.0	495.0	2743.0	854.0
14	1348.0	167.0	6551.0	443.0
15	296.0	276.0	7454.0	483.0
16	1567.0	690.0	5086.0	1166.0
17	3283.0	743.0	3960.0	523.0
18	4578.0	1093.0	1100.0	1738.0
19	1962.25	1018.25	4201.25	1327.25
20	1524.75	1584.75	3790.75	1608.75

PFM

	A	C	G	T
01	0.264	0.075	0.572	0.088
02	0.087	0.651	0.149	0.112
03	0.145	0.062	0.647	0.145
04	0.084	0.63	0.224	0.062
05	0.003	0.995	0.001	0.002
06	0.992	0.004	0.004	0.0
07	0.0	0.009	0.99	0.001
08	0.0	0.0	0.0	1.0
09	0.004	0.0	0.995	0.001
10	0.006	0.794	0.018	0.182
11	0.029	0.966	0.003	0.003
12	0.575	0.092	0.281	0.051
13	0.519	0.058	0.322	0.1
14	0.158	0.02	0.77	0.052
15	0.035	0.032	0.876	0.057
16	0.184	0.081	0.598	0.137
17	0.386	0.087	0.465	0.061
18	0.538	0.128	0.129	0.204
19	0.231	0.12	0.494	0.156
20	0.179	0.186	0.445	0.189

PWM

	A	C	G	T
01	0.056	-1.198	0.827	-1.039
02	-1.052	0.957	-0.515	-0.8
03	-0.542	-1.385	0.951	-0.544
04	-1.091	0.924	-0.111	-1.385
05	-4.396	1.38	-5.681	-4.875
06	1.377	-4.101	-4.159	-5.829
07	-5.829	-3.316	1.375	-5.242
08	-6.214	-6.847	-6.481	1.385
09	-4.101	-6.214	1.381	-5.681
10	-3.688	1.155	-2.606	-0.317
11	-2.161	1.351	-4.434	-4.322
12	0.833	-0.999	0.118	-1.576
13	0.73	-1.455	0.254	-0.911
14	-0.456	-2.532	1.124	-1.565
15	-1.966	-2.035	1.253	-1.479
16	-0.305	-1.124	0.871	-0.6
17	0.434	-1.05	0.621	-1.4
18	0.766	-0.665	-0.659	-0.202
19	-0.081	-0.736	0.68	-0.471
20	-0.333	-0.294	0.577	-0.279

Standard thresholds

P-value	Threshold
0.001	-0.53059
0.0005	1.11731
0.0001	4.55266