ZNF746.H13INVIVO.0.PSG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF746.H13INVIVO.0.PSG.A
Gene (human)	ZNF746 (GeneCards)
Gene synonyms (human)	PARIS
Gene (mouse)	Znf746
Gene synonyms (mouse)	Zfp746
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	26
Consensus	hYYYYCYYYYhhhYdCCCTCCCYMYh
GC content	70.37%
Information content (bits; total / per base)	21.804 / 0.839
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	948
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.855	0.867	0.725	0.737	0.828	0.843	25.731	31.824

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 1 experiments	median	0.717	0.659	0.65	0.615	0.585	0.576
GFPIVT, 1 experiments	best	0.717	0.659	0.65	0.615	0.585	0.576

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 1 experiments	median	120.854	0.913	0.941	0.842
GFPIVT, 1 experiments	best	171.409	0.919	0.944	0.849

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.26
HGNC	HGNC:21948
MGI	MGI:1916478
EntrezGene (human)	GeneID:155061 (SSTAR profile)
EntrezGene (mouse)	GeneID:69228 (SSTAR profile)
UniProt ID (human)	ZN746_HUMAN
UniProt ID (mouse)	ZN746_MOUSE
UniProt AC (human)	Q6NUN9 (TFClass)
UniProt AC (mouse)	Q3U133 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF746.H13INVIVO.0.PSG.A.pcm
PWM	ZNF746.H13INVIVO.0.PSG.A.pwm
PFM	ZNF746.H13INVIVO.0.PSG.A.pfm
Threshold to P-value map	ZNF746.H13INVIVO.0.PSG.A.thr
Motif in other formats
JASPAR format	ZNF746.H13INVIVO.0.PSG.A_jaspar_format.txt
MEME format	ZNF746.H13INVIVO.0.PSG.A_meme_format.meme
Transfac format	ZNF746.H13INVIVO.0.PSG.A_transfac_format.txt
Homer format	ZNF746.H13INVIVO.0.PSG.A_homer_format_0.001.txt ZNF746.H13INVIVO.0.PSG.A_homer_format_0.0005.txt ZNF746.H13INVIVO.0.PSG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	131.5	513.5	88.5	214.5
02	103.0	567.0	84.0	194.0
03	73.0	634.0	77.0	164.0
04	94.0	604.0	71.0	179.0
05	55.0	716.0	52.0	125.0
06	46.0	742.0	18.0	142.0
07	46.0	685.0	22.0	195.0
08	87.0	603.0	18.0	240.0
09	101.0	621.0	32.0	194.0
10	91.0	662.0	36.0	159.0
11	133.0	530.0	60.0	225.0
12	195.0	382.0	57.0	314.0
13	116.0	555.0	77.0	200.0
14	72.0	559.0	79.0	238.0
15	154.0	130.0	390.0	274.0
16	28.0	877.0	1.0	42.0
17	5.0	943.0	0.0	0.0
18	6.0	942.0	0.0	0.0
19	27.0	4.0	4.0	913.0
20	0.0	937.0	0.0	11.0
21	37.0	907.0	3.0	1.0
22	9.0	731.0	8.0	200.0
23	106.0	453.0	7.0	382.0
24	155.0	630.0	15.0	148.0
25	121.75	571.75	98.75	155.75
26	179.0	378.0	169.0	222.0

PFM

	A	C	G	T
01	0.139	0.542	0.093	0.226
02	0.109	0.598	0.089	0.205
03	0.077	0.669	0.081	0.173
04	0.099	0.637	0.075	0.189
05	0.058	0.755	0.055	0.132
06	0.049	0.783	0.019	0.15
07	0.049	0.723	0.023	0.206
08	0.092	0.636	0.019	0.253
09	0.107	0.655	0.034	0.205
10	0.096	0.698	0.038	0.168
11	0.14	0.559	0.063	0.237
12	0.206	0.403	0.06	0.331
13	0.122	0.585	0.081	0.211
14	0.076	0.59	0.083	0.251
15	0.162	0.137	0.411	0.289
16	0.03	0.925	0.001	0.044
17	0.005	0.995	0.0	0.0
18	0.006	0.994	0.0	0.0
19	0.028	0.004	0.004	0.963
20	0.0	0.988	0.0	0.012
21	0.039	0.957	0.003	0.001
22	0.009	0.771	0.008	0.211
23	0.112	0.478	0.007	0.403
24	0.164	0.665	0.016	0.156
25	0.128	0.603	0.104	0.164
26	0.189	0.399	0.178	0.234

PWM

	A	C	G	T
01	-0.583	0.769	-0.973	-0.099
02	-0.824	0.868	-1.024	-0.199
03	-1.162	0.979	-1.109	-0.365
04	-0.914	0.931	-1.189	-0.278
05	-1.437	1.101	-1.492	-0.633
06	-1.61	1.136	-2.494	-0.507
07	-1.61	1.057	-2.309	-0.194
08	-0.99	0.929	-2.494	0.012
09	-0.843	0.959	-1.957	-0.199
10	-0.946	1.023	-1.845	-0.396
11	-0.572	0.801	-1.353	-0.052
12	-0.194	0.475	-1.403	0.28
13	-0.707	0.847	-1.109	-0.168
14	-1.175	0.854	-1.084	0.004
15	-0.427	-0.595	0.495	0.144
16	-2.084	1.303	-4.477	-1.698
17	-3.571	1.376	-4.937	-4.937
18	-3.432	1.375	-4.937	-4.937
19	-2.118	-3.732	-3.732	1.343
20	-4.937	1.369	-4.937	-2.933
21	-1.819	1.337	-3.925	-4.477
22	-3.104	1.121	-3.202	-0.168
23	-0.796	0.644	-3.31	0.475
24	-0.421	0.973	-2.659	-0.467
25	-0.659	0.876	-0.865	-0.416
26	-0.278	0.464	-0.335	-0.065

Standard thresholds

P-value	Threshold
0.001	-0.44609
0.0005	1.05131
0.0001	4.20966