ZNF772.H13INVITRO.0.PG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF772.H13INVITRO.0.PG.A
Gene (human)	ZNF772 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	21
Consensus	dRTSWRYKSATKWGKRWvhKK
GC content	43.15%
Information content (bits; total / per base)	17.213 / 0.82
Data sources	ChIP-Seq + Genomic HT-SELEX
Aligned words	310
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.574	0.703	0.573	0.729	0.666	0.793	7.501	14.081

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 1 experiments	median	92.886	0.728	0.732	0.726
GFPIVT, 1 experiments	best	93.585	0.801	0.804	0.75

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	ZNF134-like {2.3.4.24} (TFClass)
TFClass ID	TFClass: 2.3.4.24.3
HGNC	HGNC:33106
MGI
EntrezGene (human)	GeneID:400720 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN772_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q68DY9 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
Genomic HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF772.H13INVITRO.0.PG.A.pcm
PWM	ZNF772.H13INVITRO.0.PG.A.pwm
PFM	ZNF772.H13INVITRO.0.PG.A.pfm
Threshold to P-value map	ZNF772.H13INVITRO.0.PG.A.thr
Motif in other formats
JASPAR format	ZNF772.H13INVITRO.0.PG.A_jaspar_format.txt
MEME format	ZNF772.H13INVITRO.0.PG.A_meme_format.meme
Transfac format	ZNF772.H13INVITRO.0.PG.A_transfac_format.txt
Homer format	ZNF772.H13INVITRO.0.PG.A_homer_format_0.001.txt ZNF772.H13INVITRO.0.PG.A_homer_format_0.0005.txt ZNF772.H13INVITRO.0.PG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	90.0	23.0	40.0	157.0
02	44.0	13.0	229.0	24.0
03	13.0	20.0	10.0	267.0
04	2.0	170.0	135.0	3.0
05	147.0	11.0	18.0	134.0
06	152.0	1.0	141.0	16.0
07	3.0	195.0	3.0	109.0
08	12.0	0.0	116.0	182.0
09	2.0	98.0	184.0	26.0
10	261.0	4.0	43.0	2.0
11	0.0	1.0	0.0	309.0
12	1.0	2.0	140.0	167.0
13	172.0	1.0	4.0	133.0
14	8.0	2.0	278.0	22.0
15	1.0	26.0	92.0	191.0
16	84.0	15.0	185.0	26.0
17	133.0	32.0	4.0	141.0
18	38.0	113.0	130.0	29.0
19	30.0	135.0	16.0	129.0
20	25.0	11.0	117.0	157.0
21	23.0	20.0	31.0	236.0

PFM

	A	C	G	T
01	0.29	0.074	0.129	0.506
02	0.142	0.042	0.739	0.077
03	0.042	0.065	0.032	0.861
04	0.006	0.548	0.435	0.01
05	0.474	0.035	0.058	0.432
06	0.49	0.003	0.455	0.052
07	0.01	0.629	0.01	0.352
08	0.039	0.0	0.374	0.587
09	0.006	0.316	0.594	0.084
10	0.842	0.013	0.139	0.006
11	0.0	0.003	0.0	0.997
12	0.003	0.006	0.452	0.539
13	0.555	0.003	0.013	0.429
14	0.026	0.006	0.897	0.071
15	0.003	0.084	0.297	0.616
16	0.271	0.048	0.597	0.084
17	0.429	0.103	0.013	0.455
18	0.123	0.365	0.419	0.094
19	0.097	0.435	0.052	0.416
20	0.081	0.035	0.377	0.506
21	0.074	0.065	0.1	0.761

PWM

	A	C	G	T
01	0.147	-1.173	-0.645	0.697
02	-0.552	-1.699	1.071	-1.133
03	-1.699	-1.304	-1.932	1.224
04	-3.135	0.776	0.547	-2.879
05	0.632	-1.848	-1.402	0.54
06	0.665	-3.479	0.59	-1.51
07	-2.879	0.912	-2.879	0.336
08	-1.771	-4.008	0.397	0.843
09	-3.135	0.231	0.854	-1.057
10	1.201	-2.676	-0.575	-3.135
11	-4.008	-3.479	-4.008	1.369
12	-3.479	-3.135	0.583	0.758
13	0.787	-3.479	-2.676	0.532
14	-2.124	-3.135	1.264	-1.214
15	-3.479	-1.057	0.169	0.891
16	0.079	-1.569	0.859	-1.057
17	0.532	-0.859	-2.676	0.59
18	-0.694	0.371	0.51	-0.953
19	-0.921	0.547	-1.51	0.502
20	-1.094	-1.848	0.406	0.697
21	-1.173	-1.304	-0.889	1.101

Standard thresholds

P-value	Threshold
0.001	2.35056
0.0005	3.58041
0.0001	6.14911