ZNF772.H13INVIVO.0.PG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF772.H13INVIVO.0.PG.A
Gene (human)	ZNF772 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	21
Consensus	dYWKhRRSAGvSYMWSbMdKR
GC content	56.56%
Information content (bits; total / per base)	14.06 / 0.67
Data sources	ChIP-Seq + Genomic HT-SELEX
Aligned words	238
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.64	0.719	0.549	0.672	0.689	0.722	10.516	21.032

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 1 experiments	median	0.0	0.403	0.433	0.291
GFPIVT, 1 experiments	best	0.0	0.433	0.451	0.298

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	ZNF134-like {2.3.4.24} (TFClass)
TFClass ID	TFClass: 2.3.4.24.3
HGNC	HGNC:33106
MGI
EntrezGene (human)	GeneID:400720 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN772_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q68DY9 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
Genomic HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF772.H13INVIVO.0.PG.A.pcm
PWM	ZNF772.H13INVIVO.0.PG.A.pwm
PFM	ZNF772.H13INVIVO.0.PG.A.pfm
Threshold to P-value map	ZNF772.H13INVIVO.0.PG.A.thr
Motif in other formats
JASPAR format	ZNF772.H13INVIVO.0.PG.A_jaspar_format.txt
MEME format	ZNF772.H13INVIVO.0.PG.A_meme_format.meme
Transfac format	ZNF772.H13INVIVO.0.PG.A_transfac_format.txt
Homer format	ZNF772.H13INVIVO.0.PG.A_homer_format_0.001.txt ZNF772.H13INVIVO.0.PG.A_homer_format_0.0005.txt ZNF772.H13INVIVO.0.PG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	184.0	12.0	21.0	21.0
02	7.0	173.0	21.0	37.0
03	32.0	11.0	10.0	185.0
04	32.0	7.0	113.0	86.0
05	49.0	31.0	21.0	137.0
06	30.0	17.0	172.0	19.0
07	37.0	3.0	170.0	28.0
08	13.0	53.0	163.0	9.0
09	205.0	14.0	9.0	10.0
10	18.0	8.0	208.0	4.0
11	77.0	73.0	83.0	5.0
12	13.0	181.0	34.0	10.0
13	20.0	177.0	9.0	32.0
14	100.0	110.0	22.0	6.0
15	105.0	7.0	23.0	103.0
16	18.0	98.0	106.0	16.0
17	26.0	27.0	88.0	97.0
18	36.0	156.0	14.0	32.0
19	81.0	15.0	38.0	104.0
20	19.0	4.0	170.0	45.0
21	71.0	9.0	146.0	12.0

PFM

	A	C	G	T
01	0.773	0.05	0.088	0.088
02	0.029	0.727	0.088	0.155
03	0.134	0.046	0.042	0.777
04	0.134	0.029	0.475	0.361
05	0.206	0.13	0.088	0.576
06	0.126	0.071	0.723	0.08
07	0.155	0.013	0.714	0.118
08	0.055	0.223	0.685	0.038
09	0.861	0.059	0.038	0.042
10	0.076	0.034	0.874	0.017
11	0.324	0.307	0.349	0.021
12	0.055	0.761	0.143	0.042
13	0.084	0.744	0.038	0.134
14	0.42	0.462	0.092	0.025
15	0.441	0.029	0.097	0.433
16	0.076	0.412	0.445	0.067
17	0.109	0.113	0.37	0.408
18	0.151	0.655	0.059	0.134
19	0.34	0.063	0.16	0.437
20	0.08	0.017	0.714	0.189
21	0.298	0.038	0.613	0.05

PWM

	A	C	G	T
01	1.114	-1.516	-1.001	-1.001
02	-1.984	1.052	-1.001	-0.461
03	-0.601	-1.594	-1.678	1.119
04	-0.601	-1.984	0.631	0.361
05	-0.189	-0.632	-1.001	0.821
06	-0.663	-1.198	1.047	-1.095
07	-0.461	-2.634	1.035	-0.729
08	-1.444	-0.113	0.993	-1.77
09	1.221	-1.376	-1.77	-1.678
10	-1.145	-1.871	1.235	-2.428
11	0.253	0.2	0.326	-2.257
12	-1.444	1.097	-0.543	-1.678
13	-1.047	1.075	-1.77	-0.601
14	0.51	0.604	-0.957	-2.112
15	0.558	-1.984	-0.915	0.539
16	-1.145	0.49	0.568	-1.254
17	-0.799	-0.763	0.384	0.48
18	-0.488	0.95	-1.376	-0.601
19	0.302	-1.313	-0.436	0.549
20	-1.095	-2.428	1.035	-0.272
21	0.173	-1.77	0.884	-1.516

Standard thresholds

P-value	Threshold
0.001	3.89241
0.0005	4.82831
0.0001	6.81936