ZNF772.H13RSNP.0.PG.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF772.H13RSNP.0.PG.D
Gene (human)	ZNF772 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	21
Consensus	WRTCAACTGATTAGKdWYnTW
GC content	37.48%
Information content (bits; total / per base)	25.446 / 1.212
Data sources	ChIP-Seq + Genomic HT-SELEX
Aligned words	124
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.712	0.782	0.654	0.776	0.639	0.743	12.625	18.125

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 1 experiments	median	140.523	0.631	0.81	0.786
GFPIVT, 1 experiments	best	152.658	0.656	0.826	0.788

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	ZNF134-like {2.3.4.24} (TFClass)
TFClass ID	TFClass: 2.3.4.24.3
HGNC	HGNC:33106
MGI
EntrezGene (human)	GeneID:400720 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN772_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q68DY9 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
Genomic HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF772.H13RSNP.0.PG.D.pcm
PWM	ZNF772.H13RSNP.0.PG.D.pwm
PFM	ZNF772.H13RSNP.0.PG.D.pfm
Threshold to P-value map	ZNF772.H13RSNP.0.PG.D.thr
Motif in other formats
JASPAR format	ZNF772.H13RSNP.0.PG.D_jaspar_format.txt
MEME format	ZNF772.H13RSNP.0.PG.D_meme_format.meme
Transfac format	ZNF772.H13RSNP.0.PG.D_transfac_format.txt
Homer format	ZNF772.H13RSNP.0.PG.D_homer_format_0.001.txt ZNF772.H13RSNP.0.PG.D_homer_format_0.0005.txt ZNF772.H13RSNP.0.PG.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	73.0	5.0	21.0	25.0
02	24.0	5.0	82.0	13.0
03	6.0	9.0	6.0	103.0
04	0.0	118.0	5.0	1.0
05	112.0	2.0	2.0	8.0
06	104.0	0.0	12.0	8.0
07	0.0	117.0	7.0	0.0
08	0.0	0.0	0.0	124.0
09	0.0	0.0	124.0	0.0
10	120.0	0.0	0.0	4.0
11	0.0	0.0	4.0	120.0
12	0.0	0.0	1.0	123.0
13	118.0	0.0	6.0	0.0
14	2.0	0.0	96.0	26.0
15	0.0	14.0	74.0	36.0
16	46.0	11.0	45.0	22.0
17	98.0	10.0	5.0	11.0
18	15.0	85.0	6.0	18.0
19	14.0	61.0	14.0	35.0
20	3.0	4.0	9.0	108.0
21	11.0	6.0	10.0	97.0

PFM

	A	C	G	T
01	0.589	0.04	0.169	0.202
02	0.194	0.04	0.661	0.105
03	0.048	0.073	0.048	0.831
04	0.0	0.952	0.04	0.008
05	0.903	0.016	0.016	0.065
06	0.839	0.0	0.097	0.065
07	0.0	0.944	0.056	0.0
08	0.0	0.0	0.0	1.0
09	0.0	0.0	1.0	0.0
10	0.968	0.0	0.0	0.032
11	0.0	0.0	0.032	0.968
12	0.0	0.0	0.008	0.992
13	0.952	0.0	0.048	0.0
14	0.016	0.0	0.774	0.21
15	0.0	0.113	0.597	0.29
16	0.371	0.089	0.363	0.177
17	0.79	0.081	0.04	0.089
18	0.121	0.685	0.048	0.145
19	0.113	0.492	0.113	0.282
20	0.024	0.032	0.073	0.871
21	0.089	0.048	0.081	0.782

PWM

	A	C	G	T
01	0.835	-1.647	-0.372	-0.206
02	-0.245	-1.647	0.949	-0.819
03	-1.497	-1.149	-1.497	1.174
04	-3.286	1.309	-1.647	-2.681
05	1.257	-2.307	-2.307	-1.252
06	1.184	-3.286	-0.892	-1.252
07	-3.286	1.3	-1.367	-3.286
08	-3.286	-3.286	-3.286	1.358
09	-3.286	-3.286	1.358	-3.286
10	1.325	-3.286	-3.286	-1.822
11	-3.286	-3.286	-1.822	1.325
12	-3.286	-3.286	-2.681	1.35
13	1.309	-3.286	-1.497	-3.286
14	-2.307	-3.286	1.105	-0.169
15	-3.286	-0.75	0.848	0.144
16	0.382	-0.97	0.361	-0.328
17	1.125	-1.056	-1.647	-0.97
18	-0.687	0.985	-1.497	-0.517
19	-0.75	0.658	-0.75	0.117
20	-2.036	-1.822	-1.149	1.221
21	-0.97	-1.497	-1.056	1.115

Standard thresholds

P-value	Threshold
0.001	-0.87099
0.0005	0.58156
0.0001	3.68501