ZNF773.H13INVIVO.0.PG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF773.H13INVIVO.0.PG.A
Gene (human)	ZNF773 (GeneCards)
Gene synonyms (human)	ZNF419B
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	19
Consensus	CCYMddddCTCCWbYYdhd
GC content	49.92%
Information content (bits; total / per base)	12.378 / 0.651
Data sources	ChIP-Seq + Genomic HT-SELEX
Aligned words	130
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.755	0.807	0.754	0.799	0.767	0.808	16.941	24.745

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 1 experiments	median	27.453	0.642	0.513	0.572
GFPIVT, 1 experiments	best	33.268	0.657	0.58	0.616

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF773-like {2.3.3.42} (TFClass)
TFClass ID	TFClass: 2.3.3.42.1
HGNC	HGNC:30487
MGI
EntrezGene (human)	GeneID:374928 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN773_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q6PK81 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
Genomic HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF773.H13INVIVO.0.PG.A.pcm
PWM	ZNF773.H13INVIVO.0.PG.A.pwm
PFM	ZNF773.H13INVIVO.0.PG.A.pfm
Threshold to P-value map	ZNF773.H13INVIVO.0.PG.A.thr
Motif in other formats
JASPAR format	ZNF773.H13INVIVO.0.PG.A_jaspar_format.txt
MEME format	ZNF773.H13INVIVO.0.PG.A_meme_format.meme
Transfac format	ZNF773.H13INVIVO.0.PG.A_transfac_format.txt
Homer format	ZNF773.H13INVIVO.0.PG.A_homer_format_0.001.txt ZNF773.H13INVIVO.0.PG.A_homer_format_0.0005.txt ZNF773.H13INVIVO.0.PG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	7.0	104.0	7.0	12.0
02	8.0	106.0	1.0	15.0
03	12.0	23.0	13.0	82.0
04	80.0	29.0	10.0	11.0
05	41.0	19.0	49.0	21.0
06	52.0	14.0	49.0	15.0
07	31.0	16.0	56.0	27.0
08	71.0	11.0	20.0	28.0
09	5.0	104.0	9.0	12.0
10	2.0	8.0	3.0	117.0
11	5.0	108.0	4.0	13.0
12	3.0	120.0	1.0	6.0
13	12.0	11.0	4.0	103.0
14	2.0	44.0	28.0	56.0
15	13.0	97.0	6.0	14.0
16	11.0	28.0	7.0	84.0
17	19.0	18.0	23.0	70.0
18	66.0	32.0	12.0	20.0
19	66.0	17.0	22.0	25.0

PFM

	A	C	G	T
01	0.054	0.8	0.054	0.092
02	0.062	0.815	0.008	0.115
03	0.092	0.177	0.1	0.631
04	0.615	0.223	0.077	0.085
05	0.315	0.146	0.377	0.162
06	0.4	0.108	0.377	0.115
07	0.238	0.123	0.431	0.208
08	0.546	0.085	0.154	0.215
09	0.038	0.8	0.069	0.092
10	0.015	0.062	0.023	0.9
11	0.038	0.831	0.031	0.1
12	0.023	0.923	0.008	0.046
13	0.092	0.085	0.031	0.792
14	0.015	0.338	0.215	0.431
15	0.1	0.746	0.046	0.108
16	0.085	0.215	0.054	0.646
17	0.146	0.138	0.177	0.538
18	0.508	0.246	0.092	0.154
19	0.508	0.131	0.169	0.192

PWM

	A	C	G	T
01	-1.412	1.138	-1.412	-0.937
02	-1.297	1.157	-2.722	-0.732
03	-0.937	-0.331	-0.864	0.903
04	0.879	-0.11	-1.101	-1.015
05	0.225	-0.511	0.398	-0.417
06	0.456	-0.796	0.398	-0.732
07	-0.046	-0.672	0.529	-0.178
08	0.762	-1.015	-0.463	-0.143
09	-1.691	1.138	-1.194	-0.937
10	-2.35	-1.297	-2.079	1.255
11	-1.691	1.175	-1.866	-0.864
12	-2.079	1.28	-2.722	-1.542
13	-0.937	-1.015	-1.866	1.128
14	-2.35	0.293	-0.143	0.529
15	-0.864	1.069	-1.542	-0.796
16	-1.015	-0.143	-1.412	0.927
17	-0.511	-0.562	-0.331	0.748
18	0.69	-0.015	-0.937	-0.463
19	0.69	-0.616	-0.373	-0.252

Standard thresholds

P-value	Threshold
0.001	4.35881
0.0005	5.21261
0.0001	7.02271