ZNF773.H13RSNP.0.PG.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF773.H13RSNP.0.PG.D
Gene (human)	ZNF773 (GeneCards)
Gene synonyms (human)	ZNF419B
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	21
Consensus	CMChMvvnMCWSCWYMhhMMM
GC content	54.82%
Information content (bits; total / per base)	14.241 / 0.678
Data sources	ChIP-Seq + Genomic HT-SELEX
Aligned words	119
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.751	0.762	0.697	0.722	0.77	0.778	10.356	13.092

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 1 experiments	median	23.634	0.853	0.793	0.626
GFPIVT, 1 experiments	best	29.444	0.856	0.817	0.667

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF773-like {2.3.3.42} (TFClass)
TFClass ID	TFClass: 2.3.3.42.1
HGNC	HGNC:30487
MGI
EntrezGene (human)	GeneID:374928 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN773_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q6PK81 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
Genomic HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF773.H13RSNP.0.PG.D.pcm
PWM	ZNF773.H13RSNP.0.PG.D.pwm
PFM	ZNF773.H13RSNP.0.PG.D.pfm
Threshold to P-value map	ZNF773.H13RSNP.0.PG.D.thr
Motif in other formats
JASPAR format	ZNF773.H13RSNP.0.PG.D_jaspar_format.txt
MEME format	ZNF773.H13RSNP.0.PG.D_meme_format.meme
Transfac format	ZNF773.H13RSNP.0.PG.D_transfac_format.txt
Homer format	ZNF773.H13RSNP.0.PG.D_homer_format_0.001.txt ZNF773.H13RSNP.0.PG.D_homer_format_0.0005.txt ZNF773.H13RSNP.0.PG.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	0.25	116.25	2.25	0.25
02	57.25	53.25	4.25	4.25
03	4.25	102.25	9.25	3.25
04	20.25	41.25	13.25	44.25
05	77.25	24.25	9.25	8.25
06	37.25	46.25	33.25	2.25
07	45.25	43.25	22.25	8.25
08	46.25	24.25	22.25	26.25
09	59.25	44.25	11.25	4.25
10	17.25	92.25	0.25	9.25
11	42.25	6.25	7.25	63.25
12	8.25	88.25	18.25	4.25
13	2.25	112.25	1.25	3.25
14	64.25	8.25	1.25	45.25
15	6.0	83.0	5.0	25.0
16	33.0	82.0	3.0	1.0
17	23.0	42.0	2.0	52.0
18	37.0	18.0	12.0	52.0
19	44.0	67.0	2.0	6.0
20	80.0	17.0	14.0	8.0
21	53.0	55.0	10.0	1.0

PFM

	A	C	G	T
01	0.002	0.977	0.019	0.002
02	0.481	0.447	0.036	0.036
03	0.036	0.859	0.078	0.027
04	0.17	0.347	0.111	0.372
05	0.649	0.204	0.078	0.069
06	0.313	0.389	0.279	0.019
07	0.38	0.363	0.187	0.069
08	0.389	0.204	0.187	0.221
09	0.498	0.372	0.095	0.036
10	0.145	0.775	0.002	0.078
11	0.355	0.053	0.061	0.532
12	0.069	0.742	0.153	0.036
13	0.019	0.943	0.011	0.027
14	0.54	0.069	0.011	0.38
15	0.05	0.697	0.042	0.21
16	0.277	0.689	0.025	0.008
17	0.193	0.353	0.017	0.437
18	0.311	0.151	0.101	0.437
19	0.37	0.563	0.017	0.05
20	0.672	0.143	0.118	0.067
21	0.445	0.462	0.084	0.008

PWM

	A	C	G	T
01	-3.064	1.334	-2.195	-3.064
02	0.636	0.565	-1.738	-1.738
03	-1.738	1.207	-1.086	-1.94
04	-0.367	0.316	-0.762	0.384
05	0.93	-0.196	-1.086	-1.187
06	0.217	0.427	0.107	-2.195
07	0.406	0.362	-0.278	-1.187
08	0.427	-0.196	-0.278	-0.12
09	0.67	0.384	-0.911	-1.738
10	-0.517	1.105	-3.064	-1.086
11	0.339	-1.425	-1.299	0.734
12	-1.187	1.061	-0.465	-1.738
13	-2.195	1.299	-2.538	-1.94
14	0.749	-1.187	-2.538	0.406
15	-1.459	1.001	-1.608	-0.167
16	0.1	0.989	-1.998	-2.646
17	-0.246	0.334	-2.271	0.542
18	0.21	-0.478	-0.852	0.542
19	0.379	0.79	-2.271	-1.459
20	0.965	-0.531	-0.711	-1.214
21	0.56	0.597	-1.017	-2.646

Standard thresholds

P-value	Threshold
0.001	3.92271
0.0005	4.89441
0.0001	6.93311