ZNF775.H13INVITRO.0.PSG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF775.H13INVITRO.0.PSG.A
Gene (human)	ZNF775 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Znf775
Gene synonyms (mouse)	Zfp775
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	14
Consensus	dGdGAGAAKTWRbd
GC content	47.71%
Information content (bits; total / per base)	15.513 / 1.108
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	8233
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.931	0.938	0.831	0.845	0.886	0.89	141.58	143.678

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 1 experiments	median	0.994	0.99	0.963	0.955	0.807	0.824
GFPIVT, 1 experiments	best	0.994	0.99	0.963	0.955	0.807	0.824

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 1 experiments	median	537.796	0.899	0.95	0.864
GFPIVT, 1 experiments	best	558.301	0.903	0.952	0.879

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	Unclassified {2.3.4.0} (TFClass)
TFClass ID	TFClass: 2.3.4.0.44
HGNC	HGNC:28501
MGI	MGI:2683557
EntrezGene (human)	GeneID:285971 (SSTAR profile)
EntrezGene (mouse)	GeneID:243372 (SSTAR profile)
UniProt ID (human)	ZN775_HUMAN
UniProt ID (mouse)	ZN775_MOUSE
UniProt AC (human)	Q96BV0 (TFClass)
UniProt AC (mouse)	Q8BI73 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF775.H13INVITRO.0.PSG.A.pcm
PWM	ZNF775.H13INVITRO.0.PSG.A.pwm
PFM	ZNF775.H13INVITRO.0.PSG.A.pfm
Threshold to P-value map	ZNF775.H13INVITRO.0.PSG.A.thr
Motif in other formats
JASPAR format	ZNF775.H13INVITRO.0.PSG.A_jaspar_format.txt
MEME format	ZNF775.H13INVITRO.0.PSG.A_meme_format.meme
Transfac format	ZNF775.H13INVITRO.0.PSG.A_transfac_format.txt
Homer format	ZNF775.H13INVITRO.0.PSG.A_homer_format_0.001.txt ZNF775.H13INVITRO.0.PSG.A_homer_format_0.0005.txt ZNF775.H13INVITRO.0.PSG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	2322.0	653.0	4276.0	982.0
02	348.0	32.0	7478.0	375.0
03	2121.0	185.0	3182.0	2745.0
04	15.0	0.0	8218.0	0.0
05	7154.0	2.0	2.0	1075.0
06	0.0	0.0	8233.0	0.0
07	8233.0	0.0	0.0	0.0
08	8232.0	0.0	1.0	0.0
09	20.0	544.0	3789.0	3880.0
10	401.0	565.0	152.0	7115.0
11	1219.0	195.0	869.0	5950.0
12	1836.0	44.0	5924.0	429.0
13	914.5	1992.5	3795.5	1530.5
14	1751.0	963.0	3896.0	1623.0

PFM

	A	C	G	T
01	0.282	0.079	0.519	0.119
02	0.042	0.004	0.908	0.046
03	0.258	0.022	0.386	0.333
04	0.002	0.0	0.998	0.0
05	0.869	0.0	0.0	0.131
06	0.0	0.0	1.0	0.0
07	1.0	0.0	0.0	0.0
08	1.0	0.0	0.0	0.0
09	0.002	0.066	0.46	0.471
10	0.049	0.069	0.018	0.864
11	0.148	0.024	0.106	0.723
12	0.223	0.005	0.72	0.052
13	0.111	0.242	0.461	0.186
14	0.213	0.117	0.473	0.197

PWM

	A	C	G	T
01	0.12	-1.146	0.731	-0.739
02	-1.772	-4.097	1.289	-1.698
03	0.03	-2.398	0.435	0.288
04	-4.783	-6.818	1.384	-6.818
05	1.245	-6.183	-6.183	-0.649
06	-6.818	-6.818	1.385	-6.818
07	1.385	-6.818	-6.818	-6.818
08	1.385	-6.818	-6.451	-6.818
09	-4.528	-1.328	0.61	0.633
10	-1.631	-1.29	-2.592	1.24
11	-0.523	-2.346	-0.861	1.061
12	-0.114	-3.797	1.056	-1.564
13	-0.81	-0.032	0.611	-0.296
14	-0.161	-0.758	0.638	-0.237

Standard thresholds

P-value	Threshold
0.001	0.89346
0.0005	2.67751
0.0001	6.20956