ZNF780B.H13RSNP.0.PSGI.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF780B.H13RSNP.0.PSGI.D
Gene (human)	ZNF780B (GeneCards)
Gene synonyms (human)	ZNF779
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	12
Consensus	nvCTGCTKdddv
GC content	50.77%
Information content (bits; total / per base)	11.215 / 0.935
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX + SMiLe-Seq
Aligned words	798
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.97	0.972	0.939	0.94	0.912	0.922	202.412	277.796

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 2 experiments	median	1.0	1.0	0.986	0.984	0.892	0.906
GFPIVT, 2 experiments	best	1.0	1.0	1.0	0.999	0.996	0.995

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 2 experiments	median	515.771	0.929	0.962	0.938
GFPIVT, 2 experiments	best	781.921	0.944	0.98	0.964

SMiLE-Seq benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 1 experiments	median	0.881	0.862	0.733	0.729	0.627	0.641
Overall, 1 experiments	best	0.881	0.862	0.733	0.729	0.627	0.641

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF283-like {2.3.3.67} (TFClass)
TFClass ID	TFClass: 2.3.3.67.12
HGNC	HGNC:33109
MGI
EntrezGene (human)	GeneID:163131 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	Z780B_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q9Y6R6 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
Genomic HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
SMiLE-Seq	1
PBM	0

PCM	ZNF780B.H13RSNP.0.PSGI.D.pcm
PWM	ZNF780B.H13RSNP.0.PSGI.D.pwm
PFM	ZNF780B.H13RSNP.0.PSGI.D.pfm
Threshold to P-value map	ZNF780B.H13RSNP.0.PSGI.D.thr
Motif in other formats
JASPAR format	ZNF780B.H13RSNP.0.PSGI.D_jaspar_format.txt
MEME format	ZNF780B.H13RSNP.0.PSGI.D_meme_format.meme
Transfac format	ZNF780B.H13RSNP.0.PSGI.D_transfac_format.txt
Homer format	ZNF780B.H13RSNP.0.PSGI.D_homer_format_0.001.txt ZNF780B.H13RSNP.0.PSGI.D_homer_format_0.0005.txt ZNF780B.H13RSNP.0.PSGI.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	212.75	161.75	188.75	234.75
02	205.75	134.75	407.75	49.75
03	40.0	674.0	29.0	55.0
04	5.0	2.0	2.0	789.0
05	1.0	1.0	796.0	0.0
06	5.0	793.0	0.0	0.0
07	0.0	0.0	0.0	798.0
08	52.0	8.0	562.0	176.0
09	475.0	89.0	111.0	123.0
10	470.0	59.0	128.0	141.0
11	378.0	89.0	154.0	177.0
12	205.75	320.75	150.75	120.75

PFM

	A	C	G	T
01	0.267	0.203	0.237	0.294
02	0.258	0.169	0.511	0.062
03	0.05	0.845	0.036	0.069
04	0.006	0.003	0.003	0.989
05	0.001	0.001	0.997	0.0
06	0.006	0.994	0.0	0.0
07	0.0	0.0	0.0	1.0
08	0.065	0.01	0.704	0.221
09	0.595	0.112	0.139	0.154
10	0.589	0.074	0.16	0.177
11	0.474	0.112	0.193	0.222
12	0.258	0.402	0.189	0.151

PWM

	A	C	G	T
01	0.064	-0.208	-0.055	0.161
02	0.031	-0.388	0.711	-1.364
03	-1.574	1.212	-1.881	-1.267
04	-3.406	-4.004	-4.004	1.369
05	-4.322	-4.322	1.378	-4.791
06	-3.406	1.374	-4.791	-4.791
07	-4.791	-4.791	-4.791	1.38
08	-1.321	-3.035	1.03	-0.124
09	0.863	-0.797	-0.58	-0.478
10	0.852	-1.199	-0.439	-0.344
11	0.635	-0.797	-0.256	-0.119
12	0.031	0.472	-0.278	-0.497

Standard thresholds

P-value	Threshold
0.001	4.43036
0.0005	5.551985
0.0001	7.529985