| Motif | ZNF788P.H13INVIVO.0.S.D |
| Gene (human) | ZNF788P (GeneCards) |
| Gene synonyms (human) | ZNF788 |
| Gene (mouse) | |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | ZNF788P.H13INVIVO.0.S.D |
| Gene (human) | ZNF788P (GeneCards) |
| Gene synonyms (human) | ZNF788 |
| Gene (mouse) | |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 11 |
| Consensus | nGTGAACvdhn |
| GC content | 49.64% |
| Information content (bits; total / per base) | 11.725 / 1.066 |
| Data sources | HT-SELEX |
| Aligned words | 662 |
| Previous names |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| GFPIVT, 1 experiments | median | 0.824 | 0.784 | 0.692 | 0.679 | 0.617 | 0.616 |
| best | 0.824 | 0.784 | 0.692 | 0.679 | 0.617 | 0.616 | |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | C2H2 zinc finger factors {2.3} (TFClass) |
| TF family | Multiple dispersed zinc fingers {2.3.4} (TFClass) |
| TF subfamily | Unclassified {2.3.4.0} (TFClass) |
| TFClass ID | TFClass: 2.3.4.0.60 |
| HGNC | HGNC:33112 |
| MGI | |
| EntrezGene (human) | GeneID:388507 (SSTAR profile) |
| EntrezGene (mouse) | |
| UniProt ID (human) | ZN788_HUMAN |
| UniProt ID (mouse) | |
| UniProt AC (human) | Q6ZQV5 (TFClass) |
| UniProt AC (mouse) | |
| GRECO-DB-TF | no |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 1 overall: 0 Lysate, 0 IVT, 1 GFPIVT |
| Genomic HT-SELEX | 0 overall: 0 Lysate, 0 IVT, 0 GFPIVT |
| SMiLE-Seq | 0 |
| PBM | 0 |
| PCM | ZNF788P.H13INVIVO.0.S.D.pcm |
| PWM | ZNF788P.H13INVIVO.0.S.D.pwm |
| PFM | ZNF788P.H13INVIVO.0.S.D.pfm |
| Threshold to P-value map | ZNF788P.H13INVIVO.0.S.D.thr |
| Motif in other formats | |
| JASPAR format | ZNF788P.H13INVIVO.0.S.D_jaspar_format.txt |
| MEME format | ZNF788P.H13INVIVO.0.S.D_meme_format.meme |
| Transfac format | ZNF788P.H13INVIVO.0.S.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 105.0 | 217.0 | 139.0 | 201.0 |
| 02 | 41.0 | 11.0 | 578.0 | 32.0 |
| 03 | 5.0 | 0.0 | 2.0 | 655.0 |
| 04 | 0.0 | 0.0 | 662.0 | 0.0 |
| 05 | 658.0 | 0.0 | 4.0 | 0.0 |
| 06 | 662.0 | 0.0 | 0.0 | 0.0 |
| 07 | 0.0 | 661.0 | 1.0 | 0.0 |
| 08 | 127.0 | 218.0 | 298.0 | 19.0 |
| 09 | 253.0 | 94.0 | 184.0 | 131.0 |
| 10 | 172.25 | 139.25 | 91.25 | 259.25 |
| 11 | 152.25 | 128.25 | 187.25 | 194.25 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.159 | 0.328 | 0.21 | 0.304 |
| 02 | 0.062 | 0.017 | 0.873 | 0.048 |
| 03 | 0.008 | 0.0 | 0.003 | 0.989 |
| 04 | 0.0 | 0.0 | 1.0 | 0.0 |
| 05 | 0.994 | 0.0 | 0.006 | 0.0 |
| 06 | 1.0 | 0.0 | 0.0 | 0.0 |
| 07 | 0.0 | 0.998 | 0.002 | 0.0 |
| 08 | 0.192 | 0.329 | 0.45 | 0.029 |
| 09 | 0.382 | 0.142 | 0.278 | 0.198 |
| 10 | 0.26 | 0.21 | 0.138 | 0.392 |
| 11 | 0.23 | 0.194 | 0.283 | 0.293 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.449 | 0.269 | -0.173 | 0.193 |
| 02 | -1.366 | -2.583 | 1.244 | -1.604 |
| 03 | -3.228 | -4.634 | -3.831 | 1.368 |
| 04 | -4.634 | -4.634 | 1.379 | -4.634 |
| 05 | 1.373 | -4.634 | -3.392 | -4.634 |
| 06 | 1.379 | -4.634 | -4.634 | -4.634 |
| 07 | -4.634 | 1.377 | -4.154 | -4.634 |
| 08 | -0.262 | 0.273 | 0.584 | -2.092 |
| 09 | 0.421 | -0.558 | 0.105 | -0.231 |
| 10 | 0.04 | -0.171 | -0.587 | 0.445 |
| 11 | -0.083 | -0.252 | 0.122 | 0.159 |
| P-value | Threshold |
|---|---|
| 0.001 | 3.648005 |
| 0.0005 | 5.11848 |
| 0.0001 | 8.05319 |