ZNF800.H13INVITRO.0.PSG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF800.H13INVITRO.0.PSG.A
Gene (human)	ZNF800 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Znf800
Gene synonyms (mouse)	Zfp800
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	15
Consensus	dTGCGTAAWKRSGSd
GC content	51.36%
Information content (bits; total / per base)	17.856 / 1.19
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	5964
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.667	0.667	0.445	0.448	0.424	0.443	0.002	0.004

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
overall, 3 experiments	median	0.989	0.987	0.927	0.916	0.82	0.813
overall, 3 experiments	best	1.0	1.0	0.983	0.98	0.917	0.91
Lysate, 1 experiments	median	0.671	0.624	0.638	0.597	0.603	0.574
Lysate, 1 experiments	best	0.671	0.624	0.638	0.597	0.603	0.574
GFPIVT, 2 experiments	median	0.994	0.994	0.955	0.948	0.869	0.861
GFPIVT, 2 experiments	best	1.0	1.0	0.983	0.98	0.917	0.91

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
overall, 3 experiments	median	46.367	0.511	0.802	0.713
overall, 3 experiments	best	57.174	0.581	0.876	0.754
Lysate, 1 experiments	median	5.824	0.415	0.639	0.576
Lysate, 1 experiments	best	7.538	0.424	0.647	0.595
GFPIVT, 2 experiments	median	46.561	0.552	0.819	0.73
GFPIVT, 2 experiments	best	57.174	0.581	0.876	0.754

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	Unclassified {2.3.4.0} (TFClass)
TFClass ID	TFClass: 2.3.4.0.17
HGNC	HGNC:27267
MGI	MGI:1889334
EntrezGene (human)	GeneID:168850 (SSTAR profile)
EntrezGene (mouse)	GeneID:627049 (SSTAR profile)
UniProt ID (human)	ZN800_HUMAN
UniProt ID (mouse)	ZN800_MOUSE
UniProt AC (human)	Q2TB10 (TFClass)
UniProt AC (mouse)	Q0VEE6 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	3 overall: 1 Lysate, 0 IVT, 2 GFPIVT
Genomic HT-SELEX	3 overall: 1 Lysate, 0 IVT, 2 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF800.H13INVITRO.0.PSG.A.pcm
PWM	ZNF800.H13INVITRO.0.PSG.A.pwm
PFM	ZNF800.H13INVITRO.0.PSG.A.pfm
Threshold to P-value map	ZNF800.H13INVITRO.0.PSG.A.thr
Motif in other formats
JASPAR format	ZNF800.H13INVITRO.0.PSG.A_jaspar_format.txt
MEME format	ZNF800.H13INVITRO.0.PSG.A_meme_format.meme
Transfac format	ZNF800.H13INVITRO.0.PSG.A_transfac_format.txt
Homer format	ZNF800.H13INVITRO.0.PSG.A_homer_format_0.001.txt ZNF800.H13INVITRO.0.PSG.A_homer_format_0.0005.txt ZNF800.H13INVITRO.0.PSG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	1820.0	467.0	2900.0	777.0
02	87.0	642.0	24.0	5211.0
03	4.0	4.0	5950.0	6.0
04	0.0	5964.0	0.0	0.0
05	0.0	0.0	5964.0	0.0
06	0.0	405.0	0.0	5559.0
07	5699.0	196.0	6.0	63.0
08	5767.0	41.0	21.0	135.0
09	1505.0	214.0	197.0	4048.0
10	879.0	248.0	1568.0	3269.0
11	2870.0	186.0	2571.0	337.0
12	153.0	4551.0	715.0	545.0
13	236.0	291.0	5210.0	227.0
14	401.5	4678.5	512.5	371.5
15	2807.25	468.25	1952.25	736.25

PFM

	A	C	G	T
01	0.305	0.078	0.486	0.13
02	0.015	0.108	0.004	0.874
03	0.001	0.001	0.998	0.001
04	0.0	1.0	0.0	0.0
05	0.0	0.0	1.0	0.0
06	0.0	0.068	0.0	0.932
07	0.956	0.033	0.001	0.011
08	0.967	0.007	0.004	0.023
09	0.252	0.036	0.033	0.679
10	0.147	0.042	0.263	0.548
11	0.481	0.031	0.431	0.057
12	0.026	0.763	0.12	0.091
13	0.04	0.049	0.874	0.038
14	0.067	0.784	0.086	0.062
15	0.471	0.079	0.327	0.123

PWM

	A	C	G	T
01	0.199	-1.158	0.665	-0.65
02	-2.818	-0.841	-4.044	1.25
03	-5.488	-5.488	1.383	-5.208
04	-6.532	1.385	-6.532	-6.532
05	-6.532	-6.532	1.385	-6.532
06	-6.532	-1.299	-6.532	1.315
07	1.34	-2.02	-5.208	-3.132
08	1.352	-3.543	-4.166	-2.387
09	0.009	-1.933	-2.014	0.998
10	-0.527	-1.787	0.05	0.784
11	0.654	-2.071	0.544	-1.482
12	-2.264	1.115	-0.733	-1.004
13	-1.836	-1.628	1.25	-1.874
14	-1.308	1.143	-1.065	-1.385
15	0.632	-1.155	0.269	-0.704

Standard thresholds

P-value	Threshold
0.001	0.24831
0.0005	1.87606
0.0001	5.21441