ZNF800.H13INVIVO.0.PSG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF800.H13INVIVO.0.PSG.A
Gene (human)	ZNF800 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Znf800
Gene synonyms (mouse)	Zfp800
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	10
Consensus	bCTGCGCbYb
GC content	75.0%
Information content (bits; total / per base)	10.417 / 1.042
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	500
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.763	0.765	0.575	0.575	0.568	0.587	13.867	18.114

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
overall, 3 experiments	median	0.796	0.705	0.747	0.679	0.676	0.636
overall, 3 experiments	best	0.817	0.746	0.79	0.718	0.735	0.681
Lysate, 1 experiments	median	0.57	0.538	0.545	0.527	0.532	0.521
Lysate, 1 experiments	best	0.57	0.538	0.545	0.527	0.532	0.521
GFPIVT, 2 experiments	median	0.807	0.726	0.769	0.699	0.706	0.659
GFPIVT, 2 experiments	best	0.817	0.746	0.79	0.718	0.735	0.681

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
overall, 3 experiments	median	81.824	0.61	0.749	0.617
overall, 3 experiments	best	114.0	0.634	0.827	0.659
Lysate, 1 experiments	median	10.721	0.485	0.59	0.508
Lysate, 1 experiments	best	11.638	0.516	0.604	0.529
GFPIVT, 2 experiments	median	84.031	0.622	0.759	0.626
GFPIVT, 2 experiments	best	114.0	0.634	0.827	0.659

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	Unclassified {2.3.4.0} (TFClass)
TFClass ID	TFClass: 2.3.4.0.17
HGNC	HGNC:27267
MGI	MGI:1889334
EntrezGene (human)	GeneID:168850 (SSTAR profile)
EntrezGene (mouse)	GeneID:627049 (SSTAR profile)
UniProt ID (human)	ZN800_HUMAN
UniProt ID (mouse)	ZN800_MOUSE
UniProt AC (human)	Q2TB10 (TFClass)
UniProt AC (mouse)	Q0VEE6 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	3 overall: 1 Lysate, 0 IVT, 2 GFPIVT
Genomic HT-SELEX	3 overall: 1 Lysate, 0 IVT, 2 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF800.H13INVIVO.0.PSG.A.pcm
PWM	ZNF800.H13INVIVO.0.PSG.A.pwm
PFM	ZNF800.H13INVIVO.0.PSG.A.pfm
Threshold to P-value map	ZNF800.H13INVIVO.0.PSG.A.thr
Motif in other formats
JASPAR format	ZNF800.H13INVIVO.0.PSG.A_jaspar_format.txt
MEME format	ZNF800.H13INVIVO.0.PSG.A_meme_format.meme
Transfac format	ZNF800.H13INVIVO.0.PSG.A_transfac_format.txt
Homer format	ZNF800.H13INVIVO.0.PSG.A_homer_format_0.001.txt ZNF800.H13INVIVO.0.PSG.A_homer_format_0.0005.txt ZNF800.H13INVIVO.0.PSG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	53.0	124.0	206.0	117.0
02	1.0	396.0	80.0	23.0
03	9.0	0.0	1.0	490.0
04	3.0	10.0	477.0	10.0
05	9.0	478.0	10.0	3.0
06	21.0	2.0	458.0	19.0
07	8.0	449.0	1.0	42.0
08	28.0	158.0	164.0	150.0
09	8.0	282.0	68.0	142.0
10	12.0	206.0	180.0	102.0

PFM

	A	C	G	T
01	0.106	0.248	0.412	0.234
02	0.002	0.792	0.16	0.046
03	0.018	0.0	0.002	0.98
04	0.006	0.02	0.954	0.02
05	0.018	0.956	0.02	0.006
06	0.042	0.004	0.916	0.038
07	0.016	0.898	0.002	0.084
08	0.056	0.316	0.328	0.3
09	0.016	0.564	0.136	0.284
10	0.024	0.412	0.36	0.204

PWM

	A	C	G	T
01	-0.841	-0.008	0.495	-0.065
02	-3.903	1.145	-0.439	-1.64
03	-2.484	-4.4	-3.903	1.357
04	-3.325	-2.394	1.33	-2.394
05	-2.484	1.332	-2.394	-3.325
06	-1.725	-3.573	1.29	-1.818
07	-2.584	1.27	-3.903	-1.067
08	-1.454	0.232	0.269	0.18
09	-2.584	0.807	-0.599	0.126
10	-2.234	0.495	0.361	-0.201

Standard thresholds

P-value	Threshold
0.001	4.647715
0.0005	5.490205
0.0001	7.55347