ZNF813.H13INVITRO.0.SG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF813.H13INVITRO.0.SG.A
Gene (human)	ZNF813 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	26
Consensus	ndbGAAGGARGRdRdndddddddddd
GC content	56.51%
Information content (bits; total / per base)	17.835 / 0.686
Data sources	HT-SELEX + Genomic HT-SELEX
Aligned words	2264
Previous names

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 2 experiments	median	0.982	0.97	0.958	0.941	0.865	0.855
GFPIVT, 2 experiments	best	0.982	0.97	0.96	0.943	0.889	0.873

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 2 experiments	median	338.559	0.964	0.979	0.934
GFPIVT, 2 experiments	best	444.387	0.984	0.985	0.941

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF813-like {2.3.3.72} (TFClass)
TFClass ID	TFClass: 2.3.3.72.1
HGNC	HGNC:33257
MGI
EntrezGene (human)	GeneID:126017 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN813_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q6ZN06 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 0 mouse
HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
Genomic HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF813.H13INVITRO.0.SG.A.pcm
PWM	ZNF813.H13INVITRO.0.SG.A.pwm
PFM	ZNF813.H13INVITRO.0.SG.A.pfm
Threshold to P-value map	ZNF813.H13INVITRO.0.SG.A.thr
Motif in other formats
JASPAR format	ZNF813.H13INVITRO.0.SG.A_jaspar_format.txt
MEME format	ZNF813.H13INVITRO.0.SG.A_meme_format.meme
Transfac format	ZNF813.H13INVITRO.0.SG.A_transfac_format.txt
Homer format	ZNF813.H13INVITRO.0.SG.A_homer_format_0.001.txt ZNF813.H13INVITRO.0.SG.A_homer_format_0.0005.txt ZNF813.H13INVITRO.0.SG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	613.25	470.25	743.25	437.25
02	941.0	148.0	945.0	230.0
03	220.0	251.0	646.0	1147.0
04	9.0	10.0	2229.0	16.0
05	2248.0	1.0	10.0	5.0
06	2251.0	1.0	7.0	5.0
07	0.0	2.0	2258.0	4.0
08	30.0	1.0	2233.0	0.0
09	2221.0	8.0	12.0	23.0
10	722.0	108.0	1310.0	124.0
11	182.0	40.0	1990.0	52.0
12	290.0	91.0	1794.0	89.0
13	841.0	324.0	749.0	350.0
14	408.0	166.0	1425.0	265.0
15	406.0	214.0	1328.0	316.0
16	510.0	476.0	824.0	454.0
17	669.0	366.0	832.0	397.0
18	641.0	273.0	951.0	399.0
19	582.0	288.0	963.0	431.0
20	581.0	235.0	1046.0	402.0
21	634.0	256.0	957.0	417.0
22	691.0	258.0	942.0	373.0
23	615.0	239.0	1028.0	382.0
24	604.0	241.0	1050.0	369.0
25	685.0	212.0	1021.0	346.0
26	656.0	215.0	1077.0	316.0

PFM

	A	C	G	T
01	0.271	0.208	0.328	0.193
02	0.416	0.065	0.417	0.102
03	0.097	0.111	0.285	0.507
04	0.004	0.004	0.985	0.007
05	0.993	0.0	0.004	0.002
06	0.994	0.0	0.003	0.002
07	0.0	0.001	0.997	0.002
08	0.013	0.0	0.986	0.0
09	0.981	0.004	0.005	0.01
10	0.319	0.048	0.579	0.055
11	0.08	0.018	0.879	0.023
12	0.128	0.04	0.792	0.039
13	0.371	0.143	0.331	0.155
14	0.18	0.073	0.629	0.117
15	0.179	0.095	0.587	0.14
16	0.225	0.21	0.364	0.201
17	0.295	0.162	0.367	0.175
18	0.283	0.121	0.42	0.176
19	0.257	0.127	0.425	0.19
20	0.257	0.104	0.462	0.178
21	0.28	0.113	0.423	0.184
22	0.305	0.114	0.416	0.165
23	0.272	0.106	0.454	0.169
24	0.267	0.106	0.464	0.163
25	0.303	0.094	0.451	0.153
26	0.29	0.095	0.476	0.14

PWM

	A	C	G	T
01	0.08	-0.185	0.272	-0.257
02	0.507	-1.332	0.511	-0.896
03	-0.94	-0.809	0.132	0.705
04	-3.95	-3.863	1.368	-3.455
05	1.377	-5.267	-3.863	-4.406
06	1.378	-5.267	-4.152	-4.406
07	-5.684	-4.973	1.381	-4.562
08	-2.878	-5.267	1.37	-5.684
09	1.365	-4.046	-3.708	-3.126
10	0.243	-1.642	0.837	-1.506
11	-1.127	-2.606	1.255	-2.354
12	-0.665	-1.81	1.151	-1.832
13	0.395	-0.555	0.279	-0.479
14	-0.326	-1.218	0.921	-0.755
15	-0.331	-0.967	0.851	-0.58
16	-0.104	-0.173	0.375	-0.22
17	0.167	-0.434	0.384	-0.353
18	0.124	-0.725	0.518	-0.348
19	0.028	-0.672	0.53	-0.271
20	0.026	-0.874	0.613	-0.341
21	0.113	-0.789	0.524	-0.304
22	0.199	-0.782	0.508	-0.415
23	0.083	-0.857	0.595	-0.392
24	0.065	-0.849	0.616	-0.426
25	0.19	-0.976	0.588	-0.49
26	0.147	-0.962	0.642	-0.58

Standard thresholds

P-value	Threshold
0.001	0.82356
0.0005	2.30226
0.0001	5.38781