ZNF814.H13INVIVO.0.PSG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF814.H13INVIVO.0.PSG.A
Gene (human)	ZNF814 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	21
Consensus	GRMWAGGGAGGGAMYGRWRTG
GC content	51.83%
Information content (bits; total / per base)	27.069 / 1.289
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	241
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	1 (1)	0.617	0.617	0.405	0.405	0.901	0.901	6.387	6.387

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 1 experiments	median	0.92	0.885	0.847	0.811	0.753	0.73
GFPIVT, 1 experiments	best	0.92	0.885	0.847	0.811	0.753	0.73

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 2 experiments	median	33.072	0.908	0.642	0.443
GFPIVT, 2 experiments	best	59.699	0.96	0.654	0.463

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	ZNF417-like {2.3.4.1} (TFClass)
TFClass ID	TFClass: 2.3.4.1.4
HGNC	HGNC:33258
MGI
EntrezGene (human)	GeneID:730051 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN814_HUMAN
UniProt ID (mouse)
UniProt AC (human)	B7Z6K7 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF814.H13INVIVO.0.PSG.A.pcm
PWM	ZNF814.H13INVIVO.0.PSG.A.pwm
PFM	ZNF814.H13INVIVO.0.PSG.A.pfm
Threshold to P-value map	ZNF814.H13INVIVO.0.PSG.A.thr
Motif in other formats
JASPAR format	ZNF814.H13INVIVO.0.PSG.A_jaspar_format.txt
MEME format	ZNF814.H13INVIVO.0.PSG.A_meme_format.meme
Transfac format	ZNF814.H13INVIVO.0.PSG.A_transfac_format.txt
Homer format	ZNF814.H13INVIVO.0.PSG.A_homer_format_0.001.txt ZNF814.H13INVIVO.0.PSG.A_homer_format_0.0005.txt ZNF814.H13INVIVO.0.PSG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	2.0	11.0	223.0	5.0
02	139.0	2.0	98.0	2.0
03	101.0	123.0	4.0	13.0
04	90.0	2.0	2.0	147.0
05	150.0	0.0	1.0	90.0
06	0.0	1.0	239.0	1.0
07	1.0	0.0	240.0	0.0
08	101.0	0.0	140.0	0.0
09	238.0	0.0	0.0	3.0
10	0.0	0.0	144.0	97.0
11	0.0	0.0	241.0	0.0
12	2.0	0.0	239.0	0.0
13	239.0	1.0	0.0	1.0
14	125.0	108.0	7.0	1.0
15	9.0	103.0	7.0	122.0
16	42.0	4.0	193.0	2.0
17	124.0	2.0	112.0	3.0
18	122.0	5.0	4.0	110.0
19	107.0	4.0	125.0	5.0
20	1.0	0.0	7.0	233.0
21	7.0	4.0	227.0	3.0

PFM

	A	C	G	T
01	0.008	0.046	0.925	0.021
02	0.577	0.008	0.407	0.008
03	0.419	0.51	0.017	0.054
04	0.373	0.008	0.008	0.61
05	0.622	0.0	0.004	0.373
06	0.0	0.004	0.992	0.004
07	0.004	0.0	0.996	0.0
08	0.419	0.0	0.581	0.0
09	0.988	0.0	0.0	0.012
10	0.0	0.0	0.598	0.402
11	0.0	0.0	1.0	0.0
12	0.008	0.0	0.992	0.0
13	0.992	0.004	0.0	0.004
14	0.519	0.448	0.029	0.004
15	0.037	0.427	0.029	0.506
16	0.174	0.017	0.801	0.008
17	0.515	0.008	0.465	0.012
18	0.506	0.021	0.017	0.456
19	0.444	0.017	0.519	0.021
20	0.004	0.0	0.029	0.967
21	0.029	0.017	0.942	0.012

PWM

	A	C	G	T
01	-2.906	-1.606	1.292	-2.269
02	0.823	-2.906	0.478	-2.906
03	0.508	0.702	-2.44	-1.456
04	0.394	-2.906	-2.906	0.879
05	0.899	-3.805	-3.258	0.394
06	-3.805	-3.258	1.361	-3.258
07	-3.258	-3.805	1.365	-3.805
08	0.508	-3.805	0.83	-3.805
09	1.357	-3.805	-3.805	-2.646
10	-3.805	-3.805	0.858	0.468
11	-3.805	-3.805	1.369	-3.805
12	-2.906	-3.805	1.361	-3.805
13	1.361	-3.258	-3.805	-3.258
14	0.718	0.574	-1.996	-3.258
15	-1.782	0.527	-1.996	0.694
16	-0.351	-2.44	1.149	-2.906
17	0.71	-2.906	0.61	-2.646
18	0.694	-2.269	-2.44	0.592
19	0.565	-2.44	0.718	-2.269
20	-3.258	-3.805	-1.996	1.336
21	-1.996	-2.44	1.31	-2.646

Standard thresholds

P-value	Threshold
0.001	-4.22224
0.0005	-2.47384
0.0001	1.25846