ZNF814.H13RSNP.0.PSG.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF814.H13RSNP.0.PSG.D
Gene (human)	ZNF814 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	19
Consensus	nbdnbhdTTAGGGAGGGWn
GC content	55.1%
Information content (bits; total / per base)	19.57 / 1.03
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	2402
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	1 (1)	0.6	0.6	0.529	0.529	0.39	0.39	12.056	12.056

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 1 experiments	median	0.999	0.999	0.991	0.989	0.876	0.887
GFPIVT, 1 experiments	best	0.999	0.999	0.991	0.989	0.876	0.887

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 2 experiments	median	60.265	0.33	0.541	0.483
GFPIVT, 2 experiments	best	222.252	0.539	0.67	0.658

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	ZNF417-like {2.3.4.1} (TFClass)
TFClass ID	TFClass: 2.3.4.1.4
HGNC	HGNC:33258
MGI
EntrezGene (human)	GeneID:730051 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN814_HUMAN
UniProt ID (mouse)
UniProt AC (human)	B7Z6K7 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF814.H13RSNP.0.PSG.D.pcm
PWM	ZNF814.H13RSNP.0.PSG.D.pwm
PFM	ZNF814.H13RSNP.0.PSG.D.pfm
Threshold to P-value map	ZNF814.H13RSNP.0.PSG.D.thr
Motif in other formats
JASPAR format	ZNF814.H13RSNP.0.PSG.D_jaspar_format.txt
MEME format	ZNF814.H13RSNP.0.PSG.D_meme_format.meme
Transfac format	ZNF814.H13RSNP.0.PSG.D_transfac_format.txt
Homer format	ZNF814.H13RSNP.0.PSG.D_homer_format_0.001.txt ZNF814.H13RSNP.0.PSG.D_homer_format_0.0005.txt ZNF814.H13RSNP.0.PSG.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	456.25	527.25	767.25	651.25
02	395.0	413.0	1049.0	545.0
03	436.0	338.0	1020.0	608.0
04	489.0	873.0	486.0	554.0
05	322.0	912.0	658.0	510.0
06	254.0	989.0	237.0	922.0
07	949.0	63.0	875.0	515.0
08	16.0	260.0	62.0	2064.0
09	8.0	5.0	32.0	2357.0
10	2400.0	1.0	0.0	1.0
11	0.0	1.0	2401.0	0.0
12	0.0	1.0	2401.0	0.0
13	2.0	0.0	2400.0	0.0
14	2372.0	0.0	10.0	20.0
15	18.0	12.0	2365.0	7.0
16	2.0	3.0	2389.0	8.0
17	57.0	7.0	1939.0	399.0
18	1552.25	190.25	175.25	484.25
19	656.25	526.25	758.25	461.25

PFM

	A	C	G	T
01	0.19	0.22	0.319	0.271
02	0.164	0.172	0.437	0.227
03	0.182	0.141	0.425	0.253
04	0.204	0.363	0.202	0.231
05	0.134	0.38	0.274	0.212
06	0.106	0.412	0.099	0.384
07	0.395	0.026	0.364	0.214
08	0.007	0.108	0.026	0.859
09	0.003	0.002	0.013	0.981
10	0.999	0.0	0.0	0.0
11	0.0	0.0	1.0	0.0
12	0.0	0.0	1.0	0.0
13	0.001	0.0	0.999	0.0
14	0.988	0.0	0.004	0.008
15	0.007	0.005	0.985	0.003
16	0.001	0.001	0.995	0.003
17	0.024	0.003	0.807	0.166
18	0.646	0.079	0.073	0.202
19	0.273	0.219	0.316	0.192

PWM

	A	C	G	T
01	-0.274	-0.13	0.244	0.081
02	-0.417	-0.373	0.556	-0.097
03	-0.319	-0.572	0.528	0.012
04	-0.205	0.373	-0.211	-0.08
05	-0.62	0.417	0.091	-0.163
06	-0.856	0.498	-0.925	0.428
07	0.456	-2.227	0.375	-0.153
08	-3.514	-0.833	-2.243	1.232
09	-4.104	-4.463	-2.876	1.365
10	1.383	-5.321	-5.735	-5.321
11	-5.735	-5.321	1.383	-5.735
12	-5.735	-5.321	1.383	-5.735
13	-5.028	-5.735	1.383	-5.735
14	1.371	-5.735	-3.921	-3.312
15	-3.408	-3.766	1.368	-4.21
16	-5.028	-4.802	1.378	-4.104
17	-2.324	-4.21	1.17	-0.407
18	0.948	-1.142	-1.224	-0.214
19	0.089	-0.132	0.233	-0.263

Standard thresholds

P-value	Threshold
0.001	-2.15394
0.0005	-0.33399
0.0001	3.46586