| Motif | ZNF827.H13INVITRO.0.SG.A |
| Gene (human) | ZNF827 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Znf827 |
| Gene synonyms (mouse) | Zfp827 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | A |
| Motif | ZNF827.H13INVITRO.0.SG.A |
| Gene (human) | ZNF827 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Znf827 |
| Gene synonyms (mouse) | Zfp827 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | A |
| Motif length | 11 |
| Consensus | dKTTAGGCWYh |
| GC content | 45.41% |
| Information content (bits; total / per base) | 12.815 / 1.165 |
| Data sources | HT-SELEX + Genomic HT-SELEX |
| Aligned words | 8028 |
| Previous names |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| GFPIVT, 1 experiments | median | 0.984 | 0.977 | 0.946 | 0.931 | 0.836 | 0.831 |
| best | 0.984 | 0.977 | 0.946 | 0.931 | 0.836 | 0.831 | |
| Genomic HT-SELEX benchmarking | Centrality | pseudo-auROC | auROC | auPR | |
|---|---|---|---|---|---|
| GFPIVT, 1 experiments | median | 19.041 | 0.744 | 0.847 | 0.76 |
| best | 195.187 | 0.791 | 0.87 | 0.772 | |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | C2H2 zinc finger factors {2.3} (TFClass) |
| TF family | Multiple dispersed zinc fingers {2.3.4} (TFClass) |
| TF subfamily | Unclassified {2.3.4.0} (TFClass) |
| TFClass ID | TFClass: 2.3.4.0.11 |
| HGNC | HGNC:27193 |
| MGI | MGI:2444807 |
| EntrezGene (human) | GeneID:152485 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:622675 (SSTAR profile) |
| UniProt ID (human) | ZN827_HUMAN |
| UniProt ID (mouse) | ZN827_MOUSE |
| UniProt AC (human) | Q17R98 (TFClass) |
| UniProt AC (mouse) | Q505G8 (TFClass) |
| GRECO-DB-TF | no |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 1 overall: 0 Lysate, 0 IVT, 1 GFPIVT |
| Genomic HT-SELEX | 1 overall: 0 Lysate, 0 IVT, 1 GFPIVT |
| SMiLE-Seq | 0 |
| PBM | 0 |
| PCM | ZNF827.H13INVITRO.0.SG.A.pcm |
| PWM | ZNF827.H13INVITRO.0.SG.A.pwm |
| PFM | ZNF827.H13INVITRO.0.SG.A.pfm |
| Threshold to P-value map | ZNF827.H13INVITRO.0.SG.A.thr |
| Motif in other formats | |
| JASPAR format | ZNF827.H13INVITRO.0.SG.A_jaspar_format.txt |
| MEME format | ZNF827.H13INVITRO.0.SG.A_meme_format.meme |
| Transfac format | ZNF827.H13INVITRO.0.SG.A_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 3217.5 | 938.5 | 2103.5 | 1768.5 |
| 02 | 422.0 | 1113.0 | 1578.0 | 4915.0 |
| 03 | 3.0 | 149.0 | 5.0 | 7871.0 |
| 04 | 0.0 | 0.0 | 0.0 | 8028.0 |
| 05 | 8028.0 | 0.0 | 0.0 | 0.0 |
| 06 | 0.0 | 0.0 | 8028.0 | 0.0 |
| 07 | 0.0 | 0.0 | 8028.0 | 0.0 |
| 08 | 179.0 | 5850.0 | 1962.0 | 37.0 |
| 09 | 3337.0 | 43.0 | 1157.0 | 3491.0 |
| 10 | 939.75 | 5653.75 | 228.75 | 1205.75 |
| 11 | 3348.75 | 1918.75 | 1345.75 | 1414.75 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.401 | 0.117 | 0.262 | 0.22 |
| 02 | 0.053 | 0.139 | 0.197 | 0.612 |
| 03 | 0.0 | 0.019 | 0.001 | 0.98 |
| 04 | 0.0 | 0.0 | 0.0 | 1.0 |
| 05 | 1.0 | 0.0 | 0.0 | 0.0 |
| 06 | 0.0 | 0.0 | 1.0 | 0.0 |
| 07 | 0.0 | 0.0 | 1.0 | 0.0 |
| 08 | 0.022 | 0.729 | 0.244 | 0.005 |
| 09 | 0.416 | 0.005 | 0.144 | 0.435 |
| 10 | 0.117 | 0.704 | 0.028 | 0.15 |
| 11 | 0.417 | 0.239 | 0.168 | 0.176 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.472 | -0.759 | 0.047 | -0.126 |
| 02 | -1.555 | -0.589 | -0.24 | 0.895 |
| 03 | -5.948 | -2.587 | -5.625 | 1.366 |
| 04 | -6.796 | -6.796 | -6.796 | 1.385 |
| 05 | 1.385 | -6.796 | -6.796 | -6.796 |
| 06 | -6.796 | -6.796 | 1.385 | -6.796 |
| 07 | -6.796 | -6.796 | 1.385 | -6.796 |
| 08 | -2.406 | 1.069 | -0.023 | -3.936 |
| 09 | 0.508 | -3.793 | -0.55 | 0.553 |
| 10 | -0.758 | 1.035 | -2.163 | -0.509 |
| 11 | 0.511 | -0.045 | -0.399 | -0.349 |
| P-value | Threshold |
|---|---|
| 0.001 | 2.10635 |
| 0.0005 | 4.154315 |
| 0.0001 | 7.545975 |