ZNF83.H13RSNP.0.G.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF83.H13RSNP.0.G.D
Gene (human)	ZNF83 (GeneCards)
Gene synonyms (human)	ZNF816B
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	15
Consensus	CTTYYTYTCYTdbhd
GC content	36.09%
Information content (bits; total / per base)	14.548 / 0.97
Data sources	Genomic HT-SELEX
Aligned words	466
Previous names

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 1 experiments	median	418.377	0.813	0.775	0.75
GFPIVT, 1 experiments	best	565.31	0.846	0.831	0.792

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.188
HGNC	HGNC:13158
MGI
EntrezGene (human)	GeneID:55769 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZNF83_HUMAN
UniProt ID (mouse)
UniProt AC (human)	P51522 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 0 mouse
HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
Genomic HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF83.H13RSNP.0.G.D.pcm
PWM	ZNF83.H13RSNP.0.G.D.pwm
PFM	ZNF83.H13RSNP.0.G.D.pfm
Threshold to P-value map	ZNF83.H13RSNP.0.G.D.thr
Motif in other formats
JASPAR format	ZNF83.H13RSNP.0.G.D_jaspar_format.txt
MEME format	ZNF83.H13RSNP.0.G.D_meme_format.meme
Transfac format	ZNF83.H13RSNP.0.G.D_transfac_format.txt
Homer format	ZNF83.H13RSNP.0.G.D_homer_format_0.001.txt ZNF83.H13RSNP.0.G.D_homer_format_0.0005.txt ZNF83.H13RSNP.0.G.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	4.0	429.0	7.0	26.0
02	47.0	20.0	10.0	389.0
03	9.0	10.0	15.0	432.0
04	3.0	207.0	7.0	249.0
05	19.0	138.0	11.0	298.0
06	15.0	23.0	12.0	416.0
07	3.0	268.0	3.0	192.0
08	11.0	3.0	4.0	448.0
09	2.0	444.0	13.0	7.0
10	6.0	134.0	5.0	321.0
11	23.0	18.0	21.0	404.0
12	147.0	53.0	121.0	145.0
13	27.0	219.0	44.0	176.0
14	69.0	88.0	48.0	261.0
15	204.0	72.0	76.0	114.0

PFM

	A	C	G	T
01	0.009	0.921	0.015	0.056
02	0.101	0.043	0.021	0.835
03	0.019	0.021	0.032	0.927
04	0.006	0.444	0.015	0.534
05	0.041	0.296	0.024	0.639
06	0.032	0.049	0.026	0.893
07	0.006	0.575	0.006	0.412
08	0.024	0.006	0.009	0.961
09	0.004	0.953	0.028	0.015
10	0.013	0.288	0.011	0.689
11	0.049	0.039	0.045	0.867
12	0.315	0.114	0.26	0.311
13	0.058	0.47	0.094	0.378
14	0.148	0.189	0.103	0.56
15	0.438	0.155	0.163	0.245

PWM

	A	C	G	T
01	-3.06	1.294	-2.627	-1.455
02	-0.889	-1.701	-2.326	1.197
03	-2.416	-2.326	-1.965	1.301
04	-3.259	0.569	-2.627	0.753
05	-1.749	0.167	-2.242	0.931
06	-1.965	-1.571	-2.166	1.263
07	-3.259	0.826	-3.259	0.494
08	-2.242	-3.259	-3.06	1.337
09	-3.508	1.328	-2.094	-2.627
10	-2.751	0.138	-2.894	1.005
11	-1.571	-1.799	-1.656	1.234
12	0.23	-0.772	0.037	0.216
13	-1.42	0.625	-0.952	0.408
14	-0.515	-0.276	-0.868	0.799
15	0.555	-0.473	-0.42	-0.021

Standard thresholds

P-value	Threshold
0.001	3.34056
0.0005	4.45116
0.0001	6.70366