ZNF836.H13INVIVO.0.PSG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF836.H13INVIVO.0.PSG.A
Gene (human)	ZNF836 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	21
Consensus	nbbWSRMKCAGCCAKGCCACh
GC content	58.15%
Information content (bits; total / per base)	22.028 / 1.049
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	659
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.874	0.888	0.857	0.868	0.832	0.878	185.008	218.161

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 3 experiments	median	0.683	0.672	0.601	0.598	0.559	0.561
GFPIVT, 3 experiments	best	1.0	0.999	0.998	0.998	0.973	0.971

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 3 experiments	median	35.432	0.686	0.702	0.648
GFPIVT, 3 experiments	best	621.959	0.958	0.949	0.945

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF841-like {2.3.3.79} (TFClass)
TFClass ID	TFClass: 2.3.3.79.2
HGNC	HGNC:34333
MGI
EntrezGene (human)	GeneID:162962 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN836_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q6ZNA1 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	3 overall: 0 Lysate, 0 IVT, 3 GFPIVT
Genomic HT-SELEX	3 overall: 0 Lysate, 0 IVT, 3 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF836.H13INVIVO.0.PSG.A.pcm
PWM	ZNF836.H13INVIVO.0.PSG.A.pwm
PFM	ZNF836.H13INVIVO.0.PSG.A.pfm
Threshold to P-value map	ZNF836.H13INVIVO.0.PSG.A.thr
Motif in other formats
JASPAR format	ZNF836.H13INVIVO.0.PSG.A_jaspar_format.txt
MEME format	ZNF836.H13INVIVO.0.PSG.A_meme_format.meme
Transfac format	ZNF836.H13INVIVO.0.PSG.A_transfac_format.txt
Homer format	ZNF836.H13INVIVO.0.PSG.A_homer_format_0.001.txt ZNF836.H13INVIVO.0.PSG.A_homer_format_0.0005.txt ZNF836.H13INVIVO.0.PSG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	94.0	141.0	283.0	141.0
02	97.0	126.0	103.0	333.0
03	87.0	150.0	110.0	312.0
04	448.0	49.0	69.0	93.0
05	59.0	74.0	486.0	40.0
06	439.0	91.0	110.0	19.0
07	425.0	150.0	32.0	52.0
08	54.0	23.0	344.0	238.0
09	5.0	653.0	0.0	1.0
10	641.0	2.0	16.0	0.0
11	6.0	17.0	629.0	7.0
12	0.0	536.0	8.0	115.0
13	13.0	638.0	0.0	8.0
14	612.0	9.0	8.0	30.0
15	9.0	107.0	398.0	145.0
16	50.0	7.0	590.0	12.0
17	10.0	600.0	0.0	49.0
18	5.0	625.0	4.0	25.0
19	640.0	4.0	12.0	3.0
20	8.0	557.0	20.0	74.0
21	288.0	237.0	29.0	105.0

PFM

	A	C	G	T
01	0.143	0.214	0.429	0.214
02	0.147	0.191	0.156	0.505
03	0.132	0.228	0.167	0.473
04	0.68	0.074	0.105	0.141
05	0.09	0.112	0.737	0.061
06	0.666	0.138	0.167	0.029
07	0.645	0.228	0.049	0.079
08	0.082	0.035	0.522	0.361
09	0.008	0.991	0.0	0.002
10	0.973	0.003	0.024	0.0
11	0.009	0.026	0.954	0.011
12	0.0	0.813	0.012	0.175
13	0.02	0.968	0.0	0.012
14	0.929	0.014	0.012	0.046
15	0.014	0.162	0.604	0.22
16	0.076	0.011	0.895	0.018
17	0.015	0.91	0.0	0.074
18	0.008	0.948	0.006	0.038
19	0.971	0.006	0.018	0.005
20	0.012	0.845	0.03	0.112
21	0.437	0.36	0.044	0.159

PWM

	A	C	G	T
01	-0.554	-0.154	0.537	-0.154
02	-0.523	-0.265	-0.464	0.699
03	-0.63	-0.093	-0.399	0.634
04	0.994	-1.19	-0.857	-0.564
05	-1.01	-0.788	1.075	-1.386
06	0.974	-0.586	-0.399	-2.088
07	0.942	-0.093	-1.599	-1.132
08	-1.096	-1.911	0.731	0.365
09	-3.224	1.37	-4.63	-4.15
10	1.351	-3.827	-2.245	-4.63
11	-3.083	-2.19	1.332	-2.96
12	-4.63	1.173	-2.85	-0.355
13	-2.432	1.347	-4.63	-2.85
14	1.305	-2.751	-2.85	-1.66
15	-2.751	-0.426	0.876	-0.126
16	-1.17	-2.96	1.269	-2.502
17	-2.661	1.285	-4.63	-1.19
18	-3.224	1.326	-3.387	-1.832
19	1.35	-3.387	-2.502	-3.583
20	-2.85	1.211	-2.04	-0.788
21	0.554	0.361	-1.692	-0.445

Standard thresholds

P-value	Threshold
0.001	-0.52629
0.0005	0.94646
0.0001	4.07421