ZNF836.H13RSNP.0.PSG.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF836.H13RSNP.0.PSG.D
Gene (human)	ZNF836 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	18
Consensus	MMTCRGCCASGCCAChhh
GC content	61.02%
Information content (bits; total / per base)	21.67 / 1.204
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	8985
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.857	0.868	0.816	0.822	0.818	0.862	145.786	173.174

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 3 experiments	median	0.716	0.706	0.627	0.622	0.579	0.578
GFPIVT, 3 experiments	best	1.0	1.0	1.0	0.999	0.987	0.985

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 3 experiments	median	31.222	0.747	0.75	0.692
GFPIVT, 3 experiments	best	645.553	0.965	0.954	0.944

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF841-like {2.3.3.79} (TFClass)
TFClass ID	TFClass: 2.3.3.79.2
HGNC	HGNC:34333
MGI
EntrezGene (human)	GeneID:162962 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN836_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q6ZNA1 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	3 overall: 0 Lysate, 0 IVT, 3 GFPIVT
Genomic HT-SELEX	3 overall: 0 Lysate, 0 IVT, 3 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF836.H13RSNP.0.PSG.D.pcm
PWM	ZNF836.H13RSNP.0.PSG.D.pwm
PFM	ZNF836.H13RSNP.0.PSG.D.pfm
Threshold to P-value map	ZNF836.H13RSNP.0.PSG.D.thr
Motif in other formats
JASPAR format	ZNF836.H13RSNP.0.PSG.D_jaspar_format.txt
MEME format	ZNF836.H13RSNP.0.PSG.D_meme_format.meme
Transfac format	ZNF836.H13RSNP.0.PSG.D_transfac_format.txt
Homer format	ZNF836.H13RSNP.0.PSG.D_homer_format_0.001.txt ZNF836.H13RSNP.0.PSG.D_homer_format_0.0005.txt ZNF836.H13RSNP.0.PSG.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	5375.75	1843.75	1407.75	357.75
02	4629.5	3218.5	501.5	635.5
03	238.0	158.0	149.0	8440.0
04	24.0	8916.0	7.0	38.0
05	5435.0	56.0	3488.0	6.0
06	178.0	199.0	8574.0	34.0
07	2.0	5430.0	13.0	3540.0
08	914.0	8050.0	1.0	20.0
09	8922.0	5.0	4.0	54.0
10	17.0	6361.0	1619.0	988.0
11	209.0	11.0	8707.0	58.0
12	18.0	8826.0	1.0	140.0
13	20.0	8702.0	41.0	222.0
14	8787.0	41.0	120.0	37.0
15	87.0	8098.0	69.0	731.0
16	1084.0	4952.0	935.0	2014.0
17	2024.25	2524.25	1089.25	3347.25
18	1771.25	3723.25	852.25	2638.25

PFM

	A	C	G	T
01	0.598	0.205	0.157	0.04
02	0.515	0.358	0.056	0.071
03	0.026	0.018	0.017	0.939
04	0.003	0.992	0.001	0.004
05	0.605	0.006	0.388	0.001
06	0.02	0.022	0.954	0.004
07	0.0	0.604	0.001	0.394
08	0.102	0.896	0.0	0.002
09	0.993	0.001	0.0	0.006
10	0.002	0.708	0.18	0.11
11	0.023	0.001	0.969	0.006
12	0.002	0.982	0.0	0.016
13	0.002	0.969	0.005	0.025
14	0.978	0.005	0.013	0.004
15	0.01	0.901	0.008	0.081
16	0.121	0.551	0.104	0.224
17	0.225	0.281	0.121	0.373
18	0.197	0.414	0.095	0.294

PWM

	A	C	G	T
01	0.872	-0.197	-0.467	-1.832
02	0.723	0.359	-1.496	-1.26
03	-2.236	-2.641	-2.699	1.323
04	-4.449	1.378	-5.491	-4.022
05	0.883	-3.653	0.44	-5.605
06	-2.524	-2.413	1.339	-4.127
07	-6.265	0.882	-4.992	0.454
08	-0.898	1.276	-6.531	-4.615
09	1.379	-5.733	-5.881	-3.688
10	-4.759	1.04	-0.327	-0.82
11	-2.365	-5.132	1.354	-3.619
12	-4.709	1.368	-6.531	-2.76
13	-4.615	1.354	-3.95	-2.305
14	1.363	-3.95	-2.912	-4.047
15	-3.226	1.282	-3.451	-1.121
16	-0.728	0.79	-0.875	-0.109
17	-0.104	0.117	-0.723	0.399
18	-0.237	0.505	-0.967	0.161

Standard thresholds

P-value	Threshold
0.001	-2.73119
0.0005	-0.95124
0.0001	2.79351