ZNF841.H13RSNP.0.PSGI.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF841.H13RSNP.0.PSGI.D
Gene (human)	ZNF841 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	19
Consensus	RGTRMMSTGGvTGCTSYYv
GC content	59.31%
Information content (bits; total / per base)	18.44 / 0.971
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX + SMiLe-Seq
Aligned words	480
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.732	0.769	0.687	0.747	0.577	0.577	6.421	7.62

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 1 experiments	median	1.0	1.0	1.0	0.999	0.966	0.966
GFPIVT, 1 experiments	best	1.0	1.0	1.0	0.999	0.966	0.966

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 2 experiments	median	266.569	0.896	0.908	0.895
GFPIVT, 2 experiments	best	1108.569	0.995	0.995	0.99

SMiLE-Seq benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 1 experiments	median	0.922	0.9	0.812	0.792	0.691	0.693
Overall, 1 experiments	best	0.922	0.9	0.812	0.792	0.691	0.693

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF841-like {2.3.3.79} (TFClass)
TFClass ID	TFClass: 2.3.3.79.1
HGNC	HGNC:27611
MGI
EntrezGene (human)	GeneID:284371 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN841_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q6ZN19 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
SMiLE-Seq	1
PBM	0

PCM	ZNF841.H13RSNP.0.PSGI.D.pcm
PWM	ZNF841.H13RSNP.0.PSGI.D.pwm
PFM	ZNF841.H13RSNP.0.PSGI.D.pfm
Threshold to P-value map	ZNF841.H13RSNP.0.PSGI.D.thr
Motif in other formats
JASPAR format	ZNF841.H13RSNP.0.PSGI.D_jaspar_format.txt
MEME format	ZNF841.H13RSNP.0.PSGI.D_meme_format.meme
Transfac format	ZNF841.H13RSNP.0.PSGI.D_transfac_format.txt
Homer format	ZNF841.H13RSNP.0.PSGI.D_homer_format_0.001.txt ZNF841.H13RSNP.0.PSGI.D_homer_format_0.0005.txt ZNF841.H13RSNP.0.PSGI.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	100.0	19.0	311.0	50.0
02	47.0	11.0	412.0	10.0
03	13.0	62.0	13.0	392.0
04	81.0	37.0	347.0	15.0
05	263.0	193.0	17.0	7.0
06	238.0	219.0	2.0	21.0
07	56.0	150.0	267.0	7.0
08	23.0	19.0	14.0	424.0
09	34.0	1.0	426.0	19.0
10	16.0	2.0	435.0	27.0
11	160.0	143.0	165.0	12.0
12	2.0	1.0	1.0	476.0
13	11.0	5.0	463.0	1.0
14	6.0	452.0	4.0	18.0
15	17.0	42.0	6.0	415.0
16	4.0	175.0	246.0	55.0
17	49.0	289.0	20.0	122.0
18	43.0	78.0	40.0	319.0
19	86.0	154.0	168.0	72.0

PFM

	A	C	G	T
01	0.208	0.04	0.648	0.104
02	0.098	0.023	0.858	0.021
03	0.027	0.129	0.027	0.817
04	0.169	0.077	0.723	0.031
05	0.548	0.402	0.035	0.015
06	0.496	0.456	0.004	0.044
07	0.117	0.313	0.556	0.015
08	0.048	0.04	0.029	0.883
09	0.071	0.002	0.888	0.04
10	0.033	0.004	0.906	0.056
11	0.333	0.298	0.344	0.025
12	0.004	0.002	0.002	0.992
13	0.023	0.01	0.965	0.002
14	0.013	0.942	0.008	0.038
15	0.035	0.088	0.013	0.865
16	0.008	0.365	0.513	0.115
17	0.102	0.602	0.042	0.254
18	0.09	0.163	0.083	0.665
19	0.179	0.321	0.35	0.15

PWM

	A	C	G	T
01	-0.18	-1.778	0.944	-0.858
02	-0.918	-2.271	1.224	-2.354
03	-2.123	-0.649	-2.123	1.175
04	-0.387	-1.148	1.053	-1.994
05	0.778	0.47	-1.88	-2.655
06	0.678	0.596	-3.535	-1.685
07	-0.748	0.221	0.793	-2.655
08	-1.6	-1.778	-2.057	1.253
09	-1.23	-3.867	1.258	-1.778
10	-1.936	-3.535	1.279	-1.449
11	0.285	0.173	0.315	-2.194
12	-3.535	-3.867	-3.867	1.368
13	-2.271	-2.922	1.341	-3.867
14	-2.78	1.317	-3.088	-1.828
15	-1.88	-1.027	-2.78	1.232
16	-3.088	0.373	0.711	-0.765
17	-0.877	0.871	-1.73	0.016
18	-1.004	-0.424	-1.074	0.97
19	-0.328	0.247	0.333	-0.502

Standard thresholds

P-value	Threshold
0.001	1.77211
0.0005	3.02846
0.0001	5.68466