ZNF845.H13RSNP.0.PSG.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF845.H13RSNP.0.PSG.D
Gene (human)	ZNF845 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	21
Consensus	GGKRCTvGAGAGvdnddddRd
GC content	57.75%
Information content (bits; total / per base)	16.051 / 0.764
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	500
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.759	0.765	0.688	0.694	0.766	0.77	47.594	49.051

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 3 experiments	median	0.506	0.518	0.517	0.513	0.518	0.511
GFPIVT, 3 experiments	best	0.992	0.988	0.951	0.942	0.814	0.821

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 2 experiments	median	5.293	0.758	0.595	0.452
GFPIVT, 2 experiments	best	712.77	0.939	0.933	0.904

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF813-like {2.3.3.72} (TFClass)
TFClass ID	TFClass: 2.3.3.72.7
HGNC	HGNC:25112
MGI
EntrezGene (human)	GeneID:91664 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN845_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q96IR2 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	3 overall: 0 Lysate, 0 IVT, 3 GFPIVT
Genomic HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF845.H13RSNP.0.PSG.D.pcm
PWM	ZNF845.H13RSNP.0.PSG.D.pwm
PFM	ZNF845.H13RSNP.0.PSG.D.pfm
Threshold to P-value map	ZNF845.H13RSNP.0.PSG.D.thr
Motif in other formats
JASPAR format	ZNF845.H13RSNP.0.PSG.D_jaspar_format.txt
MEME format	ZNF845.H13RSNP.0.PSG.D_meme_format.meme
Transfac format	ZNF845.H13RSNP.0.PSG.D_transfac_format.txt
Homer format	ZNF845.H13RSNP.0.PSG.D_homer_format_0.001.txt ZNF845.H13RSNP.0.PSG.D_homer_format_0.0005.txt ZNF845.H13RSNP.0.PSG.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	43.0	20.0	413.0	24.0
02	32.0	2.0	435.0	31.0
03	18.0	17.0	312.0	153.0
04	288.0	75.0	130.0	7.0
05	18.0	408.0	15.0	59.0
06	30.0	11.0	21.0	438.0
07	168.0	87.0	211.0	34.0
08	43.0	2.0	453.0	2.0
09	445.0	0.0	21.0	34.0
10	1.0	0.0	499.0	0.0
11	444.0	12.0	32.0	12.0
12	17.0	3.0	459.0	21.0
13	132.0	200.0	98.0	70.0
14	262.0	67.0	88.0	83.0
15	159.0	52.0	159.0	130.0
16	116.0	70.0	216.0	98.0
17	125.0	57.0	109.0	209.0
18	92.0	53.0	229.0	126.0
19	122.0	46.0	268.0	64.0
20	75.0	44.0	328.0	53.0
21	78.0	52.0	290.0	80.0

PFM

	A	C	G	T
01	0.086	0.04	0.826	0.048
02	0.064	0.004	0.87	0.062
03	0.036	0.034	0.624	0.306
04	0.576	0.15	0.26	0.014
05	0.036	0.816	0.03	0.118
06	0.06	0.022	0.042	0.876
07	0.336	0.174	0.422	0.068
08	0.086	0.004	0.906	0.004
09	0.89	0.0	0.042	0.068
10	0.002	0.0	0.998	0.0
11	0.888	0.024	0.064	0.024
12	0.034	0.006	0.918	0.042
13	0.264	0.4	0.196	0.14
14	0.524	0.134	0.176	0.166
15	0.318	0.104	0.318	0.26
16	0.232	0.14	0.432	0.196
17	0.25	0.114	0.218	0.418
18	0.184	0.106	0.458	0.252
19	0.244	0.092	0.536	0.128
20	0.15	0.088	0.656	0.106
21	0.156	0.104	0.58	0.16

PWM

	A	C	G	T
01	-1.044	-1.77	1.187	-1.6
02	-1.328	-3.573	1.238	-1.358
03	-1.868	-1.92	0.907	0.2
04	0.828	-0.503	0.039	-2.694
05	-1.868	1.174	-2.034	-0.737
06	-1.389	-2.311	-1.725	1.245
07	0.293	-0.357	0.519	-1.27
08	-1.044	-3.573	1.279	-3.573
09	1.261	-4.4	-1.725	-1.27
10	-3.903	-4.4	1.375	-4.4
11	1.259	-2.234	-1.328	-2.234
12	-1.92	-3.325	1.292	-1.725
13	0.054	0.465	-0.24	-0.57
14	0.734	-0.613	-0.346	-0.403
15	0.238	-0.86	0.238	0.039
16	-0.074	-0.57	0.542	-0.24
17	0.0	-0.771	-0.135	0.509
18	-0.302	-0.841	0.6	0.008
19	-0.024	-0.979	0.756	-0.658
20	-0.503	-1.022	0.957	-0.841
21	-0.464	-0.86	0.835	-0.439

Standard thresholds

P-value	Threshold
0.001	2.91861
0.0005	4.04751
0.0001	6.41736