ZNF850.H13INVITRO.0.PSG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF850.H13INVITRO.0.PSG.A
Gene (human)	ZNF850 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	22
Consensus	dKRKRRKvhbhGRGRGRGKvhh
GC content	56.65%
Information content (bits; total / per base)	14.019 / 0.637
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	9497
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.906	0.924	0.868	0.882	0.652	0.708	67.321	103.004

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 2 experiments	median	0.784	0.771	0.782	0.773	0.725	0.723
GFPIVT, 2 experiments	best	0.999	0.999	0.989	0.986	0.911	0.909

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 1 experiments	median	579.921	0.892	0.965	0.928
GFPIVT, 1 experiments	best	750.292	0.933	0.973	0.946

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.258
HGNC
MGI
EntrezGene (human)
EntrezGene (mouse)
UniProt ID (human)	ZN850_HUMAN
UniProt ID (mouse)
UniProt AC (human)	A8MQ14 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
Genomic HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF850.H13INVITRO.0.PSG.A.pcm
PWM	ZNF850.H13INVITRO.0.PSG.A.pwm
PFM	ZNF850.H13INVITRO.0.PSG.A.pfm
Threshold to P-value map	ZNF850.H13INVITRO.0.PSG.A.thr
Motif in other formats
JASPAR format	ZNF850.H13INVITRO.0.PSG.A_jaspar_format.txt
MEME format	ZNF850.H13INVITRO.0.PSG.A_meme_format.meme
Transfac format	ZNF850.H13INVITRO.0.PSG.A_transfac_format.txt
Homer format	ZNF850.H13INVITRO.0.PSG.A_homer_format_0.001.txt ZNF850.H13INVITRO.0.PSG.A_homer_format_0.0005.txt ZNF850.H13INVITRO.0.PSG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	1615.5	1389.5	3634.5	2857.5
02	576.0	886.0	7141.0	894.0
03	2552.0	465.0	5939.0	541.0
04	563.0	1181.0	1214.0	6539.0
05	6512.0	776.0	1189.0	1020.0
06	6922.0	781.0	1024.0	770.0
07	1185.0	785.0	1239.0	6288.0
08	2000.0	1196.0	5349.0	952.0
09	1608.0	5534.0	649.0	1706.0
10	996.0	5110.0	1393.0	1998.0
11	2721.0	2131.0	1056.0	3589.0
12	650.0	108.0	8611.0	128.0
13	7298.0	176.0	1715.0	308.0
14	296.0	198.0	8086.0	917.0
15	2181.0	568.0	5845.0	903.0
16	506.0	418.0	8122.0	451.0
17	1529.0	622.0	6845.0	501.0
18	403.0	229.0	8251.0	614.0
19	651.0	779.0	6786.0	1281.0
20	3813.0	2245.0	1910.0	1529.0
21	1154.75	1810.75	889.75	5641.75
22	1340.5	3320.5	774.5	4061.5

PFM

	A	C	G	T
01	0.17	0.146	0.383	0.301
02	0.061	0.093	0.752	0.094
03	0.269	0.049	0.625	0.057
04	0.059	0.124	0.128	0.689
05	0.686	0.082	0.125	0.107
06	0.729	0.082	0.108	0.081
07	0.125	0.083	0.13	0.662
08	0.211	0.126	0.563	0.1
09	0.169	0.583	0.068	0.18
10	0.105	0.538	0.147	0.21
11	0.287	0.224	0.111	0.378
12	0.068	0.011	0.907	0.013
13	0.768	0.019	0.181	0.032
14	0.031	0.021	0.851	0.097
15	0.23	0.06	0.615	0.095
16	0.053	0.044	0.855	0.047
17	0.161	0.065	0.721	0.053
18	0.042	0.024	0.869	0.065
19	0.069	0.082	0.715	0.135
20	0.401	0.236	0.201	0.161
21	0.122	0.191	0.094	0.594
22	0.141	0.35	0.082	0.428

PWM

	A	C	G	T
01	-0.385	-0.535	0.425	0.185
02	-1.413	-0.984	1.101	-0.975
03	0.072	-1.626	0.916	-1.476
04	-1.436	-0.697	-0.67	1.012
05	1.008	-1.116	-0.691	-0.844
06	1.069	-1.11	-0.84	-1.124
07	-0.694	-1.105	-0.649	0.973
08	-0.171	-0.685	0.812	-0.912
09	-0.389	0.846	-1.294	-0.33
10	-0.867	0.766	-0.533	-0.172
11	0.136	-0.108	-0.809	0.413
12	-1.293	-3.07	1.288	-2.904
13	1.122	-2.59	-0.325	-2.036
14	-2.075	-2.474	1.225	-0.95
15	-0.085	-1.427	0.9	-0.965
16	-1.542	-1.732	1.229	-1.657
17	-0.44	-1.337	1.058	-1.552
18	-1.769	-2.33	1.245	-1.35
19	-1.291	-1.112	1.05	-0.616
20	0.473	-0.056	-0.217	-0.44
21	-0.72	-0.271	-0.98	0.865
22	-0.571	0.335	-1.118	0.536

Standard thresholds

P-value	Threshold
0.001	3.73066
0.0005	4.68751
0.0001	6.72731