ZNF850.H13INVIVO.0.PSG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF850.H13INVIVO.0.PSG.A
Gene (human)	ZNF850 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	21
Consensus	MCWGARRGGGGCTCCCRSMSK
GC content	62.25%
Information content (bits; total / per base)	20.714 / 0.986
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	1000
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.925	0.938	0.912	0.926	0.694	0.759	110.197	147.886

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 2 experiments	median	0.719	0.728	0.699	0.706	0.64	0.653
GFPIVT, 2 experiments	best	0.991	0.988	0.952	0.942	0.835	0.834

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 1 experiments	median	621.284	0.92	0.95	0.943
GFPIVT, 1 experiments	best	807.125	0.937	0.953	0.949

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.258
HGNC
MGI
EntrezGene (human)
EntrezGene (mouse)
UniProt ID (human)	ZN850_HUMAN
UniProt ID (mouse)
UniProt AC (human)	A8MQ14 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
Genomic HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF850.H13INVIVO.0.PSG.A.pcm
PWM	ZNF850.H13INVIVO.0.PSG.A.pwm
PFM	ZNF850.H13INVIVO.0.PSG.A.pfm
Threshold to P-value map	ZNF850.H13INVIVO.0.PSG.A.thr
Motif in other formats
JASPAR format	ZNF850.H13INVIVO.0.PSG.A_jaspar_format.txt
MEME format	ZNF850.H13INVIVO.0.PSG.A_meme_format.meme
Transfac format	ZNF850.H13INVIVO.0.PSG.A_transfac_format.txt
Homer format	ZNF850.H13INVIVO.0.PSG.A_homer_format_0.001.txt ZNF850.H13INVIVO.0.PSG.A_homer_format_0.0005.txt ZNF850.H13INVIVO.0.PSG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	76.0	805.0	49.0	70.0
02	51.0	835.0	27.0	87.0
03	699.0	39.0	38.0	224.0
04	43.0	22.0	928.0	7.0
05	844.0	20.0	125.0	11.0
06	349.0	68.0	552.0	31.0
07	757.0	25.0	149.0	69.0
08	44.0	24.0	896.0	36.0
09	192.0	14.0	766.0	28.0
10	72.0	8.0	892.0	28.0
11	27.0	26.0	887.0	60.0
12	122.0	807.0	39.0	32.0
13	48.0	64.0	10.0	878.0
14	7.0	754.0	14.0	225.0
15	44.0	871.0	5.0	80.0
16	10.0	755.0	17.0	218.0
17	591.0	30.0	313.0	66.0
18	82.0	688.0	153.0	77.0
19	661.0	173.0	106.0	60.0
20	86.0	170.0	637.0	107.0
21	123.0	118.0	153.0	606.0

PFM

	A	C	G	T
01	0.076	0.805	0.049	0.07
02	0.051	0.835	0.027	0.087
03	0.699	0.039	0.038	0.224
04	0.043	0.022	0.928	0.007
05	0.844	0.02	0.125	0.011
06	0.349	0.068	0.552	0.031
07	0.757	0.025	0.149	0.069
08	0.044	0.024	0.896	0.036
09	0.192	0.014	0.766	0.028
10	0.072	0.008	0.892	0.028
11	0.027	0.026	0.887	0.06
12	0.122	0.807	0.039	0.032
13	0.048	0.064	0.01	0.878
14	0.007	0.754	0.014	0.225
15	0.044	0.871	0.005	0.08
16	0.01	0.755	0.017	0.218
17	0.591	0.03	0.313	0.066
18	0.082	0.688	0.153	0.077
19	0.661	0.173	0.106	0.06
20	0.086	0.17	0.637	0.107
21	0.123	0.118	0.153	0.606

PWM

	A	C	G	T
01	-1.175	1.165	-1.602	-1.255
02	-1.563	1.201	-2.171	-1.043
03	1.024	-1.821	-1.846	-0.109
04	-1.728	-2.362	1.307	-3.362
05	1.212	-2.45	-0.686	-2.985
06	0.332	-1.284	0.788	-2.04
07	1.103	-2.243	-0.513	-1.27
08	-1.706	-2.281	1.272	-1.898
09	-0.262	-2.773	1.115	-2.136
10	-1.228	-3.253	1.267	-2.136
11	-2.171	-2.206	1.261	-1.406
12	-0.71	1.167	-1.821	-2.01
13	-1.622	-1.343	-3.066	1.251
14	-3.362	1.099	-2.773	-0.105
15	-1.706	1.243	-3.622	-1.125
16	-3.066	1.101	-2.598	-0.136
17	0.856	-2.071	0.223	-1.313
18	-1.101	1.008	-0.487	-1.162
19	0.968	-0.365	-0.849	-1.406
20	-1.054	-0.382	0.931	-0.84
21	-0.702	-0.743	-0.487	0.881

Standard thresholds

P-value	Threshold
0.001	1.10316
0.0005	2.36491
0.0001	5.05886