ZNF850.H13RSNP.0.PSG.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF850.H13RSNP.0.PSG.D
Gene (human)	ZNF850 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	18
Consensus	RdvYCWGAGRGRGGMYYC
GC content	58.69%
Information content (bits; total / per base)	15.698 / 0.872
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	213
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.939	0.95	0.928	0.94	0.672	0.732	96.825	143.854

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 2 experiments	median	0.69	0.715	0.686	0.704	0.649	0.662
GFPIVT, 2 experiments	best	0.994	0.991	0.97	0.962	0.869	0.867

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 1 experiments	median	677.721	0.932	0.971	0.961
GFPIVT, 1 experiments	best	907.824	0.957	0.972	0.964

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.258
HGNC
MGI
EntrezGene (human)
EntrezGene (mouse)
UniProt ID (human)	ZN850_HUMAN
UniProt ID (mouse)
UniProt AC (human)	A8MQ14 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
Genomic HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF850.H13RSNP.0.PSG.D.pcm
PWM	ZNF850.H13RSNP.0.PSG.D.pwm
PFM	ZNF850.H13RSNP.0.PSG.D.pfm
Threshold to P-value map	ZNF850.H13RSNP.0.PSG.D.thr
Motif in other formats
JASPAR format	ZNF850.H13RSNP.0.PSG.D_jaspar_format.txt
MEME format	ZNF850.H13RSNP.0.PSG.D_meme_format.meme
Transfac format	ZNF850.H13RSNP.0.PSG.D_transfac_format.txt
Homer format	ZNF850.H13RSNP.0.PSG.D_homer_format_0.001.txt ZNF850.H13RSNP.0.PSG.D_homer_format_0.0005.txt ZNF850.H13RSNP.0.PSG.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	145.0	28.0	29.0	11.0
02	96.0	31.0	39.0	47.0
03	112.0	32.0	42.0	27.0
04	19.0	154.0	9.0	31.0
05	13.0	183.0	4.0	13.0
06	62.0	17.0	10.0	124.0
07	12.0	23.0	175.0	3.0
08	179.0	7.0	26.0	1.0
09	20.0	10.0	176.0	7.0
10	130.0	2.0	58.0	23.0
11	7.0	3.0	198.0	5.0
12	72.0	5.0	134.0	2.0
13	25.0	3.0	180.0	5.0
14	13.0	10.0	183.0	7.0
15	36.0	143.0	10.0	24.0
16	8.0	44.0	3.0	158.0
17	1.0	92.0	11.0	109.0
18	19.0	172.0	4.0	18.0

PFM

	A	C	G	T
01	0.681	0.131	0.136	0.052
02	0.451	0.146	0.183	0.221
03	0.526	0.15	0.197	0.127
04	0.089	0.723	0.042	0.146
05	0.061	0.859	0.019	0.061
06	0.291	0.08	0.047	0.582
07	0.056	0.108	0.822	0.014
08	0.84	0.033	0.122	0.005
09	0.094	0.047	0.826	0.033
10	0.61	0.009	0.272	0.108
11	0.033	0.014	0.93	0.023
12	0.338	0.023	0.629	0.009
13	0.117	0.014	0.845	0.023
14	0.061	0.047	0.859	0.033
15	0.169	0.671	0.047	0.113
16	0.038	0.207	0.014	0.742
17	0.005	0.432	0.052	0.512
18	0.089	0.808	0.019	0.085

PWM

	A	C	G	T
01	0.986	-0.621	-0.587	-1.487
02	0.578	-0.524	-0.303	-0.122
03	0.731	-0.493	-0.231	-0.656
04	-0.987	1.046	-1.664	-0.524
05	-1.337	1.217	-2.325	-1.337
06	0.149	-1.091	-1.571	0.831
07	-1.409	-0.808	1.173	-2.532
08	1.195	-1.879	-0.691	-3.15
09	-0.939	-1.571	1.178	-1.879
10	0.878	-2.794	0.083	-0.808
11	-1.879	-2.532	1.295	-2.153
12	0.295	-2.153	0.908	-2.794
13	-0.729	-2.532	1.201	-2.153
14	-1.337	-1.571	1.217	-1.879
15	-0.38	0.972	-1.571	-0.767
16	-1.766	-0.186	-2.532	1.071
17	-3.15	0.536	-1.487	0.704
18	-0.987	1.155	-2.325	-1.038

Standard thresholds

P-value	Threshold
0.001	3.37181
0.0005	4.40186
0.0001	6.58731