ZNF853.H13INVIVO.0.SG.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF853.H13INVIVO.0.SG.D
Gene (human)	ZNF853 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	13
Consensus	nGCGCTTRGRSvh
GC content	57.34%
Information content (bits; total / per base)	14.344 / 1.103
Data sources	HT-SELEX + Genomic HT-SELEX
Aligned words	775
Previous names

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 2 experiments	median	0.998	0.997	0.992	0.99	0.964	0.958
GFPIVT, 2 experiments	best	0.998	0.997	0.993	0.991	0.977	0.97

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 2 experiments	median	690.785	0.943	0.968	0.944
GFPIVT, 2 experiments	best	782.959	0.962	0.978	0.954

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF500-like {2.3.3.19} (TFClass)
TFClass ID	TFClass: 2.3.3.19.2
HGNC	HGNC:21767
MGI
EntrezGene (human)	GeneID:54753 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN853_HUMAN
UniProt ID (mouse)
UniProt AC (human)	P0CG23 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 0 mouse
HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
Genomic HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF853.H13INVIVO.0.SG.D.pcm
PWM	ZNF853.H13INVIVO.0.SG.D.pwm
PFM	ZNF853.H13INVIVO.0.SG.D.pfm
Threshold to P-value map	ZNF853.H13INVIVO.0.SG.D.thr
Motif in other formats
JASPAR format	ZNF853.H13INVIVO.0.SG.D_jaspar_format.txt
MEME format	ZNF853.H13INVIVO.0.SG.D_meme_format.meme
Transfac format	ZNF853.H13INVIVO.0.SG.D_transfac_format.txt
Homer format	ZNF853.H13INVIVO.0.SG.D_homer_format_0.001.txt ZNF853.H13INVIVO.0.SG.D_homer_format_0.0005.txt ZNF853.H13INVIVO.0.SG.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	141.0	137.0	195.0	302.0
02	230.0	4.0	540.0	1.0
03	0.0	540.0	1.0	234.0
04	0.0	0.0	775.0	0.0
05	0.0	775.0	0.0	0.0
06	0.0	0.0	0.0	775.0
07	0.0	0.0	0.0	775.0
08	362.0	0.0	213.0	200.0
09	0.0	0.0	757.0	18.0
10	221.0	4.0	383.0	167.0
11	34.0	201.0	522.0	18.0
12	298.0	328.0	117.0	32.0
13	133.0	197.0	88.0	357.0

PFM

	A	C	G	T
01	0.182	0.177	0.252	0.39
02	0.297	0.005	0.697	0.001
03	0.0	0.697	0.001	0.302
04	0.0	0.0	1.0	0.0
05	0.0	1.0	0.0	0.0
06	0.0	0.0	0.0	1.0
07	0.0	0.0	0.0	1.0
08	0.467	0.0	0.275	0.258
09	0.0	0.0	0.977	0.023
10	0.285	0.005	0.494	0.215
11	0.044	0.259	0.674	0.023
12	0.385	0.423	0.151	0.041
13	0.172	0.254	0.114	0.461

PWM

	A	C	G	T
01	-0.315	-0.343	0.006	0.441
02	0.17	-3.541	1.02	-4.296
03	-4.766	1.02	-4.296	0.187
04	-4.766	-4.766	1.38	-4.766
05	-4.766	1.38	-4.766	-4.766
06	-4.766	-4.766	-4.766	1.38
07	-4.766	-4.766	-4.766	1.38
08	0.621	-4.766	0.094	0.031
09	-4.766	-4.766	1.356	-2.296
10	0.131	-3.541	0.677	-0.147
11	-1.701	0.036	0.986	-2.296
12	0.428	0.523	-0.499	-1.759
13	-0.372	0.016	-0.779	0.607

Standard thresholds

P-value	Threshold
0.001	2.334415
0.0005	3.649975
0.0001	6.57464