ZNF865.H13INVITRO.0.PSG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF865.H13INVITRO.0.PSG.A
Gene (human)	ZNF865 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Znf865
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	21
Consensus	GTGTGYRYGbRKGTGYGTGTG
GC content	55.53%
Information content (bits; total / per base)	27.384 / 1.304
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	466
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.968	0.992	0.922	0.98	0.97	0.975	487.236	500.886

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 2 experiments	median	0.919	0.893	0.863	0.837	0.798	0.775
GFPIVT, 2 experiments	best	0.984	0.976	0.957	0.942	0.908	0.885

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
overall, 3 experiments	median	281.886	0.976	0.947	0.874
overall, 3 experiments	best	360.699	0.988	0.959	0.9
IVT, 1 experiments	median	285.553	0.988	0.954	0.89
IVT, 1 experiments	best	285.553	0.988	0.954	0.89
GFPIVT, 2 experiments	median	280.127	0.97	0.944	0.867
GFPIVT, 2 experiments	best	360.699	0.985	0.959	0.9

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.259
HGNC
MGI
EntrezGene (human)
EntrezGene (mouse)
UniProt ID (human)	ZN865_HUMAN
UniProt ID (mouse)	ZN865_MOUSE
UniProt AC (human)	P0CJ78 (TFClass)
UniProt AC (mouse)	Q3U3I9 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
Genomic HT-SELEX	3 overall: 0 Lysate, 1 IVT, 2 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF865.H13INVITRO.0.PSG.A.pcm
PWM	ZNF865.H13INVITRO.0.PSG.A.pwm
PFM	ZNF865.H13INVITRO.0.PSG.A.pfm
Threshold to P-value map	ZNF865.H13INVITRO.0.PSG.A.thr
Motif in other formats
JASPAR format	ZNF865.H13INVITRO.0.PSG.A_jaspar_format.txt
MEME format	ZNF865.H13INVITRO.0.PSG.A_meme_format.meme
Transfac format	ZNF865.H13INVITRO.0.PSG.A_transfac_format.txt
Homer format	ZNF865.H13INVITRO.0.PSG.A_homer_format_0.001.txt ZNF865.H13INVITRO.0.PSG.A_homer_format_0.0005.txt ZNF865.H13INVITRO.0.PSG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	15.0	7.0	437.0	7.0
02	6.0	4.0	10.0	446.0
03	4.0	3.0	457.0	2.0
04	11.0	15.0	9.0	431.0
05	12.0	1.0	444.0	9.0
06	9.0	125.0	26.0	306.0
07	84.0	20.0	343.0	19.0
08	8.0	53.0	44.0	361.0
09	21.0	4.0	394.0	47.0
10	18.0	174.0	68.0	206.0
11	130.0	20.0	270.0	46.0
12	15.0	30.0	60.0	361.0
13	8.0	10.0	443.0	5.0
14	2.0	14.0	11.0	439.0
15	15.0	6.0	444.0	1.0
16	31.0	135.0	5.0	295.0
17	69.0	12.0	381.0	4.0
18	4.0	30.0	9.0	423.0
19	11.0	1.0	452.0	2.0
20	4.0	9.0	0.0	453.0
21	6.0	1.0	453.0	6.0

PFM

	A	C	G	T
01	0.032	0.015	0.938	0.015
02	0.013	0.009	0.021	0.957
03	0.009	0.006	0.981	0.004
04	0.024	0.032	0.019	0.925
05	0.026	0.002	0.953	0.019
06	0.019	0.268	0.056	0.657
07	0.18	0.043	0.736	0.041
08	0.017	0.114	0.094	0.775
09	0.045	0.009	0.845	0.101
10	0.039	0.373	0.146	0.442
11	0.279	0.043	0.579	0.099
12	0.032	0.064	0.129	0.775
13	0.017	0.021	0.951	0.011
14	0.004	0.03	0.024	0.942
15	0.032	0.013	0.953	0.002
16	0.067	0.29	0.011	0.633
17	0.148	0.026	0.818	0.009
18	0.009	0.064	0.019	0.908
19	0.024	0.002	0.97	0.004
20	0.009	0.019	0.0	0.972
21	0.013	0.002	0.972	0.013

PWM

	A	C	G	T
01	-1.965	-2.627	1.312	-2.627
02	-2.751	-3.06	-2.326	1.333
03	-3.06	-3.259	1.357	-3.508
04	-2.242	-1.965	-2.416	1.299
05	-2.166	-3.84	1.328	-2.416
06	-2.416	0.07	-1.455	0.958
07	-0.322	-1.701	1.071	-1.749
08	-2.516	-0.772	-0.952	1.122
09	-1.656	-3.06	1.209	-0.889
10	-1.799	0.397	-0.529	0.564
11	0.108	-1.701	0.833	-0.91
12	-1.965	-1.32	-0.651	1.122
13	-2.516	-2.326	1.326	-2.894
14	-3.508	-2.028	-2.242	1.317
15	-1.965	-2.751	1.328	-3.84
16	-1.289	0.146	-2.894	0.921
17	-0.515	-2.166	1.176	-3.06
18	-3.06	-1.32	-2.416	1.28
19	-2.242	-3.84	1.346	-3.508
20	-3.06	-2.416	-4.342	1.348
21	-2.751	-3.84	1.348	-2.751

Standard thresholds

P-value	Threshold
0.001	-3.21494
0.0005	-1.61744
0.0001	1.80966