ZNF865.H13INVIVO.0.PSG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF865.H13INVIVO.0.PSG.A
Gene (human)	ZNF865 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Znf865
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	21
Consensus	GTGTGTGTGYRTGTGTGTGTG
GC content	53.41%
Information content (bits; total / per base)	31.133 / 1.483
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	495
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.968	0.992	0.92	0.979	0.968	0.975	497.27	508.62

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 2 experiments	median	0.924	0.901	0.868	0.843	0.804	0.783
GFPIVT, 2 experiments	best	0.986	0.98	0.964	0.95	0.92	0.898

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
overall, 3 experiments	median	278.638	0.972	0.945	0.868
overall, 3 experiments	best	364.921	0.986	0.958	0.897
IVT, 1 experiments	median	294.658	0.986	0.953	0.888
IVT, 1 experiments	best	294.658	0.986	0.953	0.888
GFPIVT, 2 experiments	median	277.513	0.968	0.942	0.861
GFPIVT, 2 experiments	best	364.921	0.983	0.958	0.897

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.259
HGNC
MGI
EntrezGene (human)
EntrezGene (mouse)
UniProt ID (human)	ZN865_HUMAN
UniProt ID (mouse)	ZN865_MOUSE
UniProt AC (human)	P0CJ78 (TFClass)
UniProt AC (mouse)	Q3U3I9 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
Genomic HT-SELEX	3 overall: 0 Lysate, 1 IVT, 2 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF865.H13INVIVO.0.PSG.A.pcm
PWM	ZNF865.H13INVIVO.0.PSG.A.pwm
PFM	ZNF865.H13INVIVO.0.PSG.A.pfm
Threshold to P-value map	ZNF865.H13INVIVO.0.PSG.A.thr
Motif in other formats
JASPAR format	ZNF865.H13INVIVO.0.PSG.A_jaspar_format.txt
MEME format	ZNF865.H13INVIVO.0.PSG.A_meme_format.meme
Transfac format	ZNF865.H13INVIVO.0.PSG.A_transfac_format.txt
Homer format	ZNF865.H13INVIVO.0.PSG.A_homer_format_0.001.txt ZNF865.H13INVIVO.0.PSG.A_homer_format_0.0005.txt ZNF865.H13INVIVO.0.PSG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	25.0	8.0	426.0	36.0
02	2.0	43.0	35.0	415.0
03	24.0	6.0	460.0	5.0
04	2.0	13.0	7.0	473.0
05	25.0	3.0	463.0	4.0
06	7.0	25.0	6.0	457.0
07	15.0	6.0	467.0	7.0
08	9.0	0.0	15.0	471.0
09	5.0	16.0	451.0	23.0
10	22.0	215.0	30.0	228.0
11	196.0	21.0	247.0	31.0
12	2.0	14.0	34.0	445.0
13	5.0	0.0	482.0	8.0
14	4.0	13.0	9.0	469.0
15	11.0	2.0	481.0	1.0
16	14.0	32.0	2.0	447.0
17	12.0	5.0	478.0	0.0
18	1.0	9.0	1.0	484.0
19	6.0	3.0	483.0	3.0
20	0.0	56.0	3.0	436.0
21	9.0	3.0	479.0	4.0

PFM

	A	C	G	T
01	0.051	0.016	0.861	0.073
02	0.004	0.087	0.071	0.838
03	0.048	0.012	0.929	0.01
04	0.004	0.026	0.014	0.956
05	0.051	0.006	0.935	0.008
06	0.014	0.051	0.012	0.923
07	0.03	0.012	0.943	0.014
08	0.018	0.0	0.03	0.952
09	0.01	0.032	0.911	0.046
10	0.044	0.434	0.061	0.461
11	0.396	0.042	0.499	0.063
12	0.004	0.028	0.069	0.899
13	0.01	0.0	0.974	0.016
14	0.008	0.026	0.018	0.947
15	0.022	0.004	0.972	0.002
16	0.028	0.065	0.004	0.903
17	0.024	0.01	0.966	0.0
18	0.002	0.018	0.002	0.978
19	0.012	0.006	0.976	0.006
20	0.0	0.113	0.006	0.881
21	0.018	0.006	0.968	0.008

PWM

	A	C	G	T
01	-1.552	-2.574	1.227	-1.205
02	-3.563	-1.034	-1.232	1.201
03	-1.59	-2.809	1.304	-2.951
04	-3.563	-2.153	-2.685	1.332
05	-1.552	-3.315	1.31	-3.117
06	-2.685	-1.552	-2.809	1.297
07	-2.024	-2.809	1.319	-2.685
08	-2.474	-4.392	-2.024	1.327
09	-2.951	-1.966	1.284	-1.63
10	-1.672	0.547	-1.379	0.605
11	0.455	-1.715	0.685	-1.348
12	-3.563	-2.087	-1.26	1.271
13	-2.951	-4.392	1.35	-2.574
14	-3.117	-2.153	-2.474	1.323
15	-2.301	-3.563	1.348	-3.894
16	-2.087	-1.318	-3.563	1.275
17	-2.224	-2.951	1.342	-4.392
18	-3.894	-2.474	-3.894	1.355
19	-2.809	-3.315	1.353	-3.315
20	-4.392	-0.778	-3.315	1.25
21	-2.474	-3.315	1.344	-3.117

Standard thresholds

P-value	Threshold
0.001	-6.06639
0.0005	-4.30489
0.0001	-0.51984