ZNF865.H13RSNP.0.PSG.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF865.H13RSNP.0.PSG.D
Gene (human)	ZNF865 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Znf865
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	21
Consensus	GTGTGTGTGYRKGTGTGTGTG
GC content	54.5%
Information content (bits; total / per base)	27.276 / 1.299
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	941
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.969	0.992	0.923	0.98	0.969	0.977	492.333	503.745

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 2 experiments	median	0.926	0.902	0.869	0.845	0.803	0.782
GFPIVT, 2 experiments	best	0.986	0.98	0.962	0.948	0.913	0.892

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
overall, 3 experiments	median	286.387	0.973	0.947	0.872
overall, 3 experiments	best	373.569	0.987	0.959	0.901
IVT, 1 experiments	median	291.658	0.987	0.954	0.892
IVT, 1 experiments	best	291.658	0.987	0.954	0.892
GFPIVT, 2 experiments	median	284.224	0.968	0.944	0.864
GFPIVT, 2 experiments	best	373.569	0.983	0.959	0.901

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.259
HGNC
MGI
EntrezGene (human)
EntrezGene (mouse)
UniProt ID (human)	ZN865_HUMAN
UniProt ID (mouse)	ZN865_MOUSE
UniProt AC (human)	P0CJ78 (TFClass)
UniProt AC (mouse)	Q3U3I9 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
Genomic HT-SELEX	3 overall: 0 Lysate, 1 IVT, 2 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF865.H13RSNP.0.PSG.D.pcm
PWM	ZNF865.H13RSNP.0.PSG.D.pwm
PFM	ZNF865.H13RSNP.0.PSG.D.pfm
Threshold to P-value map	ZNF865.H13RSNP.0.PSG.D.thr
Motif in other formats
JASPAR format	ZNF865.H13RSNP.0.PSG.D_jaspar_format.txt
MEME format	ZNF865.H13RSNP.0.PSG.D_meme_format.meme
Transfac format	ZNF865.H13RSNP.0.PSG.D_transfac_format.txt
Homer format	ZNF865.H13RSNP.0.PSG.D_homer_format_0.001.txt ZNF865.H13RSNP.0.PSG.D_homer_format_0.0005.txt ZNF865.H13RSNP.0.PSG.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	77.0	32.0	807.0	25.0
02	13.0	26.0	15.0	887.0
03	22.0	7.0	906.0	6.0
04	15.0	29.0	15.0	882.0
05	30.0	10.0	888.0	13.0
06	22.0	99.0	23.0	797.0
07	55.0	16.0	862.0	8.0
08	29.0	26.0	43.0	843.0
09	19.0	12.0	853.0	57.0
10	43.0	536.0	101.0	261.0
11	436.0	38.0	375.0	92.0
12	15.0	80.0	108.0	738.0
13	37.0	24.0	843.0	37.0
14	20.0	78.0	57.0	786.0
15	27.0	15.0	880.0	19.0
16	47.0	82.0	17.0	795.0
17	36.0	10.0	877.0	18.0
18	13.0	81.0	19.0	828.0
19	49.0	19.0	866.0	7.0
20	15.0	99.0	26.0	801.0
21	34.0	16.0	853.0	38.0

PFM

	A	C	G	T
01	0.082	0.034	0.858	0.027
02	0.014	0.028	0.016	0.943
03	0.023	0.007	0.963	0.006
04	0.016	0.031	0.016	0.937
05	0.032	0.011	0.944	0.014
06	0.023	0.105	0.024	0.847
07	0.058	0.017	0.916	0.009
08	0.031	0.028	0.046	0.896
09	0.02	0.013	0.906	0.061
10	0.046	0.57	0.107	0.277
11	0.463	0.04	0.399	0.098
12	0.016	0.085	0.115	0.784
13	0.039	0.026	0.896	0.039
14	0.021	0.083	0.061	0.835
15	0.029	0.016	0.935	0.02
16	0.05	0.087	0.018	0.845
17	0.038	0.011	0.932	0.019
18	0.014	0.086	0.02	0.88
19	0.052	0.02	0.92	0.007
20	0.016	0.105	0.028	0.851
21	0.036	0.017	0.906	0.04

PWM

	A	C	G	T
01	-1.102	-1.95	1.228	-2.183
02	-2.779	-2.146	-2.652	1.322
03	-2.302	-3.303	1.343	-3.425
04	-2.652	-2.043	-2.652	1.316
05	-2.011	-3.007	1.323	-2.779
06	-2.302	-0.856	-2.261	1.215
07	-1.43	-2.594	1.293	-3.195
08	-2.043	-2.146	-1.668	1.271
09	-2.437	-2.85	1.283	-1.395
10	-1.668	0.819	-0.836	0.103
11	0.614	-1.786	0.464	-0.928
12	-2.652	-1.065	-0.77	1.138
13	-1.812	-2.221	1.271	-1.812
14	-2.39	-1.089	-1.395	1.201
15	-2.111	-2.652	1.314	-2.437
16	-1.582	-1.041	-2.539	1.213
17	-1.838	-3.007	1.311	-2.487
18	-2.779	-1.053	-2.437	1.253
19	-1.542	-2.437	1.298	-3.303
20	-2.652	-0.856	-2.146	1.22
21	-1.892	-2.594	1.283	-1.786

Standard thresholds

P-value	Threshold
0.001	-2.55904
0.0005	-1.04774
0.0001	2.20441