ZNF878.H13CORE.0.PS.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF878.H13CORE.0.PS.A
Gene (human)	ZNF878 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	19
Consensus	dChndRCRGRAYAAAAAdd
GC content	39.92%
Information content (bits; total / per base)	16.348 / 0.86
Data sources	ChIP-Seq + HT-SELEX
Aligned words	499
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.912	0.917	0.886	0.889	0.832	0.926	292.432	363.009

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 1 experiments	median	0.756	0.749	0.623	0.636	0.558	0.578
GFPIVT, 1 experiments	best	0.756	0.749	0.623	0.636	0.558	0.578

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF763-like {2.3.3.33} (TFClass)
TFClass ID	TFClass: 2.3.3.33.18
HGNC	HGNC:37246
MGI
EntrezGene (human)	GeneID:729747 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN878_HUMAN
UniProt ID (mouse)
UniProt AC (human)	C9JN71 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF878.H13CORE.0.PS.A.pcm
PWM	ZNF878.H13CORE.0.PS.A.pwm
PFM	ZNF878.H13CORE.0.PS.A.pfm
Threshold to P-value map	ZNF878.H13CORE.0.PS.A.thr
Motif in other formats
JASPAR format	ZNF878.H13CORE.0.PS.A_jaspar_format.txt
MEME format	ZNF878.H13CORE.0.PS.A_meme_format.meme
Transfac format	ZNF878.H13CORE.0.PS.A_transfac_format.txt
Homer format	ZNF878.H13CORE.0.PS.A_homer_format_0.001.txt ZNF878.H13CORE.0.PS.A_homer_format_0.0005.txt ZNF878.H13CORE.0.PS.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	267.0	47.0	122.0	63.0
02	23.0	432.0	13.0	31.0
03	273.0	87.0	58.0	81.0
04	133.0	78.0	146.0	142.0
05	231.0	40.0	144.0	84.0
06	163.0	31.0	284.0	21.0
07	9.0	453.0	4.0	33.0
08	313.0	17.0	147.0	22.0
09	45.0	0.0	449.0	5.0
10	78.0	22.0	325.0	74.0
11	406.0	26.0	64.0	3.0
12	41.0	319.0	2.0	137.0
13	483.0	1.0	12.0	3.0
14	450.0	16.0	27.0	6.0
15	472.0	1.0	13.0	13.0
16	414.0	4.0	80.0	1.0
17	416.0	4.0	34.0	45.0
18	217.0	54.0	84.0	144.0
19	231.0	64.0	81.0	123.0

PFM

	A	C	G	T
01	0.535	0.094	0.244	0.126
02	0.046	0.866	0.026	0.062
03	0.547	0.174	0.116	0.162
04	0.267	0.156	0.293	0.285
05	0.463	0.08	0.289	0.168
06	0.327	0.062	0.569	0.042
07	0.018	0.908	0.008	0.066
08	0.627	0.034	0.295	0.044
09	0.09	0.0	0.9	0.01
10	0.156	0.044	0.651	0.148
11	0.814	0.052	0.128	0.006
12	0.082	0.639	0.004	0.275
13	0.968	0.002	0.024	0.006
14	0.902	0.032	0.054	0.012
15	0.946	0.002	0.026	0.026
16	0.83	0.008	0.16	0.002
17	0.834	0.008	0.068	0.09
18	0.435	0.108	0.168	0.289
19	0.463	0.128	0.162	0.246

PWM

	A	C	G	T
01	0.754	-0.956	-0.022	-0.671
02	-1.638	1.233	-2.161	-1.356
03	0.776	-0.355	-0.752	-0.425
04	0.063	-0.462	0.156	0.128
05	0.61	-1.112	0.142	-0.39
06	0.265	-1.356	0.816	-1.723
07	-2.482	1.281	-3.124	-1.296
08	0.912	-1.918	0.162	-1.679
09	-0.998	-4.398	1.272	-2.959
10	-0.462	-1.679	0.95	-0.514
11	1.171	-1.523	-0.656	-3.323
12	-1.088	0.931	-3.571	0.093
13	1.345	-3.901	-2.232	-3.323
14	1.274	-1.973	-1.487	-2.817
15	1.322	-3.901	-2.161	-2.161
16	1.191	-3.124	-0.437	-3.901
17	1.196	-3.124	-1.268	-0.998
18	0.548	-0.821	-0.39	0.142
19	0.61	-0.656	-0.425	-0.014

Standard thresholds

P-value	Threshold
0.001	2.73151
0.0005	3.88741
0.0001	6.31936