ZNF878.H13INVITRO.0.PS.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF878.H13INVITRO.0.PS.A
Gene (human)	ZNF878 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	18
Consensus	ndvvndRMRGRACRWWRv
GC content	48.65%
Information content (bits; total / per base)	10.974 / 0.61
Data sources	ChIP-Seq + HT-SELEX
Aligned words	1365
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.833	0.833	0.767	0.767	0.81	0.874	170.52	237.959

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 1 experiments	median	0.754	0.735	0.658	0.646	0.599	0.595
GFPIVT, 1 experiments	best	0.754	0.735	0.658	0.646	0.599	0.595

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF763-like {2.3.3.33} (TFClass)
TFClass ID	TFClass: 2.3.3.33.18
HGNC	HGNC:37246
MGI
EntrezGene (human)	GeneID:729747 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN878_HUMAN
UniProt ID (mouse)
UniProt AC (human)	C9JN71 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF878.H13INVITRO.0.PS.A.pcm
PWM	ZNF878.H13INVITRO.0.PS.A.pwm
PFM	ZNF878.H13INVITRO.0.PS.A.pfm
Threshold to P-value map	ZNF878.H13INVITRO.0.PS.A.thr
Motif in other formats
JASPAR format	ZNF878.H13INVITRO.0.PS.A_jaspar_format.txt
MEME format	ZNF878.H13INVITRO.0.PS.A_meme_format.meme
Transfac format	ZNF878.H13INVITRO.0.PS.A_transfac_format.txt
Homer format	ZNF878.H13INVITRO.0.PS.A_homer_format_0.001.txt ZNF878.H13INVITRO.0.PS.A_homer_format_0.0005.txt ZNF878.H13INVITRO.0.PS.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	502.25	245.25	365.25	252.25
02	556.5	165.5	470.5	172.5
03	220.0	715.0	301.0	129.0
04	618.0	235.0	409.0	103.0
05	354.0	250.0	441.0	320.0
06	546.0	118.0	483.0	218.0
07	753.0	95.0	410.0	107.0
08	363.0	798.0	125.0	79.0
09	682.0	15.0	662.0	6.0
10	17.0	60.0	1220.0	68.0
11	327.0	31.0	816.0	191.0
12	1329.0	0.0	28.0	8.0
13	0.0	1152.0	155.0	58.0
14	555.0	24.0	785.0	1.0
15	964.0	70.0	161.0	170.0
16	984.0	97.0	121.0	163.0
17	880.25	133.25	295.25	56.25
18	707.75	190.75	310.75	155.75

PFM

	A	C	G	T
01	0.368	0.18	0.268	0.185
02	0.408	0.121	0.345	0.126
03	0.161	0.524	0.221	0.095
04	0.453	0.172	0.3	0.075
05	0.259	0.183	0.323	0.234
06	0.4	0.086	0.354	0.16
07	0.552	0.07	0.3	0.078
08	0.266	0.585	0.092	0.058
09	0.5	0.011	0.485	0.004
10	0.012	0.044	0.894	0.05
11	0.24	0.023	0.598	0.14
12	0.974	0.0	0.021	0.006
13	0.0	0.844	0.114	0.042
14	0.407	0.018	0.575	0.001
15	0.706	0.051	0.118	0.125
16	0.721	0.071	0.089	0.119
17	0.645	0.098	0.216	0.041
18	0.518	0.14	0.228	0.114

PWM

	A	C	G	T
01	0.385	-0.328	0.068	-0.3
02	0.487	-0.718	0.32	-0.677
03	-0.436	0.737	-0.125	-0.964
04	0.592	-0.371	0.18	-1.186
05	0.036	-0.309	0.255	-0.064
06	0.468	-1.052	0.346	-0.445
07	0.789	-1.265	0.183	-1.148
08	0.061	0.846	-0.995	-1.446
09	0.69	-3.016	0.66	-3.783
10	-2.904	-1.714	1.27	-1.592
11	-0.042	-2.347	0.869	-0.576
12	1.356	-5.247	-2.443	-3.555
13	-5.247	1.213	-0.783	-1.747
14	0.484	-2.587	0.83	-4.807
15	1.035	-1.564	-0.745	-0.692
16	1.056	-1.245	-1.027	-0.733
17	0.944	-0.932	-0.144	-1.777
18	0.727	-0.578	-0.093	-0.778

Standard thresholds

P-value	Threshold
0.001	4.53506
0.0005	5.41591
0.0001	7.20911