| Motif | ZNF888.H13RSNP.0.P.D |
| Gene (human) | ZNF888 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | ZNF888.H13RSNP.0.P.D |
| Gene (human) | ZNF888 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 9 |
| Consensus | RRGGGGGAd |
| GC content | 63.07% |
| Information content (bits; total / per base) | 10.685 / 1.187 |
| Data sources | ChIP-Seq |
| Aligned words | 500 |
| Previous names |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|
| Overall | 2 (2) | 0.818 | 0.823 | 0.7 | 0.708 | 0.705 | 0.711 | 176.639 | 187.357 |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | C2H2 zinc finger factors {2.3} (TFClass) |
| TF family | More than 3 adjacent zinc fingers {2.3.3} (TFClass) |
| TF subfamily | ZNF813-like {2.3.3.72} (TFClass) |
| TFClass ID | TFClass: 2.3.3.72.255 |
| HGNC | |
| MGI | |
| EntrezGene (human) | |
| EntrezGene (mouse) | |
| UniProt ID (human) | ZN888_HUMAN |
| UniProt ID (mouse) | |
| UniProt AC (human) | P0CJ79 (TFClass) |
| UniProt AC (mouse) | |
| GRECO-DB-TF | yes |
| ChIP-Seq | 2 human, 0 mouse |
| HT-SELEX | 0 overall: 0 Lysate, 0 IVT, 0 GFPIVT |
| Genomic HT-SELEX | 0 overall: 0 Lysate, 0 IVT, 0 GFPIVT |
| SMiLE-Seq | 0 |
| PBM | 0 |
| PCM | ZNF888.H13RSNP.0.P.D.pcm |
| PWM | ZNF888.H13RSNP.0.P.D.pwm |
| PFM | ZNF888.H13RSNP.0.P.D.pfm |
| Threshold to P-value map | ZNF888.H13RSNP.0.P.D.thr |
| Motif in other formats | |
| JASPAR format | ZNF888.H13RSNP.0.P.D_jaspar_format.txt |
| MEME format | ZNF888.H13RSNP.0.P.D_meme_format.meme |
| Transfac format | ZNF888.H13RSNP.0.P.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 303.0 | 22.0 | 88.0 | 87.0 |
| 02 | 176.0 | 8.0 | 284.0 | 32.0 |
| 03 | 27.0 | 3.0 | 415.0 | 55.0 |
| 04 | 43.0 | 1.0 | 448.0 | 8.0 |
| 05 | 67.0 | 1.0 | 421.0 | 11.0 |
| 06 | 1.0 | 0.0 | 498.0 | 1.0 |
| 07 | 0.0 | 6.0 | 491.0 | 3.0 |
| 08 | 462.0 | 29.0 | 0.0 | 9.0 |
| 09 | 241.0 | 21.0 | 102.0 | 136.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.606 | 0.044 | 0.176 | 0.174 |
| 02 | 0.352 | 0.016 | 0.568 | 0.064 |
| 03 | 0.054 | 0.006 | 0.83 | 0.11 |
| 04 | 0.086 | 0.002 | 0.896 | 0.016 |
| 05 | 0.134 | 0.002 | 0.842 | 0.022 |
| 06 | 0.002 | 0.0 | 0.996 | 0.002 |
| 07 | 0.0 | 0.012 | 0.982 | 0.006 |
| 08 | 0.924 | 0.058 | 0.0 | 0.018 |
| 09 | 0.482 | 0.042 | 0.204 | 0.272 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.878 | -1.681 | -0.346 | -0.357 |
| 02 | 0.339 | -2.584 | 0.814 | -1.328 |
| 03 | -1.489 | -3.325 | 1.191 | -0.805 |
| 04 | -1.044 | -3.903 | 1.268 | -2.584 |
| 05 | -0.613 | -3.903 | 1.206 | -2.311 |
| 06 | -3.903 | -4.4 | 1.373 | -3.903 |
| 07 | -4.4 | -2.819 | 1.359 | -3.325 |
| 08 | 1.298 | -1.421 | -4.4 | -2.484 |
| 09 | 0.651 | -1.725 | -0.201 | 0.083 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.590285 |
| 0.0005 | 5.58864 |
| 0.0001 | 7.475225 |